Cwl SvgA library for generating an interactive SVG visualization of CWL workflows
Stars: ✭ 57 (-35.23%)
VerifybamidVerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.
Stars: ✭ 44 (-50%)
BgtFlexible genotype query among 30,000+ samples whole-genome
Stars: ✭ 72 (-18.18%)
LambdaLAMBDA – the Local Aligner for Massive Biological DatA
Stars: ✭ 59 (-32.95%)
OswitchProvides access to complex Bioinformatics software (even BioLinux!) in just one command.
Stars: ✭ 75 (-14.77%)
YacrdYet Another Chimeric Read Detector
Stars: ✭ 49 (-44.32%)
SquigglekitSquiggleKit: A toolkit for manipulating nanopore signal data
Stars: ✭ 81 (-7.95%)
MigmapHTS-compatible wrapper for IgBlast V-(D)-J mapping tool
Stars: ✭ 38 (-56.82%)
Bcalmcompacted de Bruijn graph construction in low memory
Stars: ✭ 69 (-21.59%)
BwaBurrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)
Stars: ✭ 970 (+1002.27%)
SibeliazA fast whole-genome aligner based on de Bruijn graphs
Stars: ✭ 76 (-13.64%)
Dna NnModel and predict short DNA sequence features with neural networks
Stars: ✭ 59 (-32.95%)
Bioconda RecipesConda recipes for the bioconda channel.
Stars: ✭ 1,247 (+1317.05%)
Sv2Support Vector Structural Variation Genotyper
Stars: ✭ 52 (-40.91%)
FlowrRobust and efficient workflows using a simple language agnostic approach
Stars: ✭ 73 (-17.05%)
SnsAnalysis pipelines for sequencing data
Stars: ✭ 43 (-51.14%)
VdjtoolsPost-analysis of immune repertoire sequencing data
Stars: ✭ 85 (-3.41%)
SinglecellhaystackFinding surprising needles (=genes) in haystacks (=single cell transcriptome data).
Stars: ✭ 41 (-53.41%)
Awesome Expression Browser😎 A curated list of software and resources for exploring and visualizing (browsing) expression data 😎
Stars: ✭ 72 (-18.18%)
Freemarker Java 8Library adding java.time support to FreeMarker
Stars: ✭ 37 (-57.95%)
GoenrichGO enrichment with python -- pandas meets networkx
Stars: ✭ 80 (-9.09%)
EtrfExact Tandem Repeat Finder (not a TRF replacement)
Stars: ✭ 35 (-60.23%)
Arcs🌈Scaffold genome sequence assemblies using linked read sequencing data
Stars: ✭ 67 (-23.86%)
Metasra PipelineMetaSRA: normalized sample-specific metadata for the Sequence Read Archive
Stars: ✭ 33 (-62.5%)
Biosequences.jlBiological sequences for the julia language
Stars: ✭ 77 (-12.5%)
Skeleton🔨 Nepxion Skeleton is a generic codes and files generator based on freemaker for any text formats, and provides skeleton of Spring Cloud with docker deployment 基于Docker & Spring Cloud的代码和文件的脚手架生成平台
Stars: ✭ 61 (-30.68%)
TruvariStructural variant toolkit for VCFs
Stars: ✭ 85 (-3.41%)
Qiime16stutorialA tutorial on methods of 16S analysis with QIIME 1
Stars: ✭ 59 (-32.95%)
Fastq.bioAn interactive web tool for quality control of DNA sequencing data
Stars: ✭ 76 (-13.64%)
Pairix1D/2D indexing and querying on bgzipped text file with a pair of genomic coordinates
Stars: ✭ 57 (-35.23%)
ClusterflowA pipelining tool to automate and standardise bioinformatics analyses on cluster environments.
Stars: ✭ 85 (-3.41%)
PlassProtein-Level ASSembler (PLASS): sensitive and precise protein assembler
Stars: ✭ 74 (-15.91%)
EmperorEmperor a tool for the analysis and visualization of large microbial ecology datasets
Stars: ✭ 51 (-42.05%)
Awesome 10x GenomicsList of tools and resources related to the 10x Genomics GEMCode/Chromium system
Stars: ✭ 82 (-6.82%)
DramDistilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes
Stars: ✭ 47 (-46.59%)
StartappThe START App: R Shiny Transcriptome Analysis Resource Tool
Stars: ✭ 73 (-17.05%)
LigerLightweight Iterative Gene set Enrichment in R
Stars: ✭ 44 (-50%)
DecontamSimple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data
Stars: ✭ 86 (-2.27%)
Awesome VdjTools and databases for analyzing HLA and VDJ genes.
Stars: ✭ 43 (-51.14%)
Coursera SpecializationsSolutions to assignments of Coursera Specializations - Deep learning, Machine learning, Algorithms & Data Structures, Image Processing and Python For Everybody
Stars: ✭ 72 (-18.18%)
GatkOfficial code repository for GATK versions 4 and up
Stars: ✭ 1,002 (+1038.64%)
EdamontologyEDAM is an ontology of bioinformatics types of data including identifiers, data formats, operations and topics.
Stars: ✭ 80 (-9.09%)
UtaUniversal Transcript Archive: comprehensive genome-transcript alignments; multiple transcript sources, versions, and alignment methods; available as a docker image
Stars: ✭ 38 (-56.82%)
GlobalbioticinteractionsGlobal Biotic Interactions provides access to existing species interaction datasets
Stars: ✭ 71 (-19.32%)
Locuszoom StandaloneCreate regional association plots from GWAS or meta-analysis
Stars: ✭ 35 (-60.23%)
Obofoundry.github.ioMetadata and website for the Open Bio Ontologies Foundry Ontology Registry
Stars: ✭ 85 (-3.41%)
ChargerCharacterization of Germline variants
Stars: ✭ 69 (-21.59%)
GenevalidatorGeneValidator: Identify problems with predicted genes
Stars: ✭ 34 (-61.36%)
SvtyperBayesian genotyper for structural variants
Stars: ✭ 79 (-10.23%)
GubbinsRapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins
Stars: ✭ 67 (-23.86%)
Bootplus基于SpringBoot + Shiro + MyBatisPlus的权限管理框架
Stars: ✭ 88 (+0%)
Awesome BioinformaticsA curated list of awesome Bioinformatics libraries and software.
Stars: ✭ 1,266 (+1338.64%)
Mygene.infoMyGene.info: A BioThings API for gene annotations
Stars: ✭ 79 (-10.23%)
GramtoolsGenome inference from a population reference graph
Stars: ✭ 65 (-26.14%)