670 Open source projects that are alternatives of or similar to Msprime

A curated list of software emulators and simulators of PCs, home computers, mainframes, consoles, robots and much more...

UWSim-NET, the Underwater Simulator

Network on Chip Simulator

A long term personal finance planning timeline app for IOS

Framework for developing OpenAI Gym robotics environments simulated with Ignition Gazebo

Simulating on GPU using Material Point Method and rendering.

Conway's Game of Life implemented with Go and OpenGL.

PGDrive: an open-ended driving simulator with infinite scenes from procedural generation

Webots Robot Simulator

Model and predict short DNA sequence features with neural networks

Pharmaceutical Modeling and Simulation for Nonlinear Mixed Effects (NLME), Quantiative Systems Pharmacology (QsP), Physiologically-Based Pharmacokinetics (PBPK) models mixed with machine learning

A fast and flexible C++ simulation engine and differential equation solver.

A 3D physics engine

Gazebo plugins for applying domain randomization

LiDAR-Inertial 3D Plane Simulator

Environmental modeling software

COVID-19 SIR model estimation

USV simulator for ROS

Pan-genome wide association studies

Open source simulator for maritime robotics researchers

Inference of ploidy and heterozygosity structure using whole genome sequencing data

Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes

Tool suite for kappa models. Documentation and binaries can be found in the release section. Try it online at

Guided synteny alignment between duplicated genomes (within specified quota constraint)

IoT Simulation service

Program for Simulation of Turbulent Flows

Dan Koschier, Jan Bender, Barbara Solenthaler, Matthias Teschner, "Smoothed Particle Hydrodynamics for Physically-Based Simulation of Fluids and Solids", Eurographics Tutorial, 2019

Public development project of the LAMMPS MD software package

Arduino (8-bit AVR) simulator, written in JavaScript and runs in the browser / Node.js

igv.js server and automatic configuration to view bam/cram/vcf/bed. "working in under 1 minute"

Project Home repo for Central Dockerfile and Project-wide issues

Package to simulate Neobotix robots

Bioinformatics library for .NET

Synthetic Patient Population Simulator

An interactive web tool for quality control of DNA sequencing data

Official code repository for GATK versions 4 and up

This project has moved to https://git.dynare.org/Dynare/dynare

RADseq Data Exploration, Manipulation and Visualization using R

A tribute to Mad TV. Written in BlitzMax, Lua and a bit of C.

Trait-Driven Models of Ecology and Evolution 🌲

A statistical framework that serves as a common interface to a large range of models

Adaptive control methods developed by Karl Johan Åström and Björn Wittenmark from the 70-80's for industrial use

Arrays with arbitrarily nested named components.

FLIP Fluids is a powerful liquid simulation plugin that gives you the ability to create high quality fluid effects all within Blender, the free and open source 3D creation suite.

Collective variables module for molecular simulation and analysis programs

A game of lonely space adventure

3D physics engine for D

Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

A basic free-surface liquid FLIP fluid simulator with viscosity

Simulating complete lives of different cellular animals and plants. Evolution, inheritance, predation and more.

Add-on for Blender to connect rigid bodies via constraints in a physical plausible way. (You only need the ZIP file for installation in Blender. Click the filename and at the next page "Download", right click and "Save As" won't work!)

Toolset to capture, simulate, synthesize and verify graph models

AQUAS TF and histone ChIP-seq pipeline

Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins

Fast creation and configuration of topologies, traffic matrices and event schedules for network experiments

A collection of scripts and notes related to genomics and bioinformatics

An open source re-implementation of RollerCoaster Tycoon 2 🎢

GCP Essentials for Bioinformatics Researchers

This repository intends to enable autonomous drone delivery with the Intel Aero RTF drone and PX4 autopilot. The code can be executed both on the real drone or simulated on a PC using Gazebo. Its core is a robot operating system (ROS) node, which communicates with the PX4 autopilot through mavros. It uses SVO 2.0 for visual odometry, WhyCon for visual marker localization and Ewok for trajectoy planning with collision avoidance.

GHOSTS is a user simulation framework for highly-complex, realistic NPC orchestration