489 Open source projects that are alternatives of or similar to nanoseq

A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences

RNA-seq analysis pipeline for detection gene-fusions

UNDER DEVELOPMENT--- Analysis of long non-coding RNAs from RNA-seq datasets

VisualQC : assistive tool to ease the quality control workflow of neuroimaging data.

A single-cell RNAseq pipeline for 10X genomics data

Precision HLA typing from next-generation sequencing data

🔬 De novo assembly of nanopore reads using nextflow

Analysis of Chromosome Conformation Capture data (Hi-C)

Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.

No description or website provided.

SARS-CoV-2 workflow for nanopore sequence data

Pipeline for annotating genomes using long read transcriptomics data with pinfish

The Modular Aligner and The Modular SV Caller

A small python program to simulate a real-time Nanopore sequencing run based on a previous experiment.

Jenkins Blue Ocean pipeline editor

This repo holds configuration for infrastructure used across the tektoncd org 🏗️

RNA mapping pipeline

Exome/Capture/RNASeq Pipeline Implementation using snakemake

A pixel classification based multiplexed image segmentation pipeline

Python toolkit for building restartable pipelines

No description or website provided.

A high performance, high expansion, easy to use framework for AI application. 为AI应用的开发者提供一套统一的高性能、易用的编程框架，快速基于AI全栈服务、开发跨端边云的AI行业应用。

Multi-sample somatic variant caller

A fast tool for hybrid genome assembly of long and short reads

Event-driven data pipelines

modular pluggable media sorter

Spline is a tool that is capable of running locally as well as part of well known pipelines like Jenkins (Jenkinsfile), Travis CI (.travis.yml) or similar ones.

A PySide2 based file and asset manager for animation and CG productions.

MTCNN implement by tensorflow. Easy to training and testing.

a web system to allow users to automatically record history and manage complicated scientific workflows in web browsers involving the online spatial data facilities, high-performance computation platforms, and open-source libraries.

Nightlight: Astronomic Image Processing

An example of how to run a Node.js project in Docker in a Buildkite pipeline

Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling

A minimal example data analysis project with the targets R package

An accurate and ultra-fast hybrid genome assembler

Extensive de-novo TE Annotator

Maximum likelihood demultiplexing

A tool to identify, orient, trim and rescue full length cDNA reads

Extensible stream pipelines with object algebras.

Open source VFX pipeline tool

Jenkins plugin for using DAGsHub as a source for multibranch projects

Make your data processing easy

A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies

Pipelines you can compute on

Maya Python API 3.0

Custom BASH script for build, archive, export and upload APK and IPA to server with Telegram notification

Helpful components for aligning and keeping virtual objects aligned with the physical world.

HUAWEI AV Pipeline Kit sample code project, which contains the Java sample code to implement functions like video playback, video super-resolution and media asset management. C++ sample code is contained for calling MediaFilter to use the sound event detection plugin.

Skin export / import tools for Autodesk Maya

A declarative KubeFlow Management Tool

Consensus calling (or "reference assisted assembly"), chiefly of ancient mitochondria

Flexible Algorithms for Image Registration

Needleman-Wunsch and Smith-Waterman algorithms in python

create tool-agnostic, templated pipelines to be shared by multiple teams

Deploy a secured, clustered, auto-scaling NiFi service in AWS.

A workshop on Unix Programming Principles using tools such as grep, sed, awk, shell programming and regular expressions

Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders

Tools and software library developed by the ONT Applications group

A simple Jenkins plugin to promote artifacts.

Pack a Go workflow/function as a Unix-style pipeline command