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Top 8 nf-core open source projects

Repository to host tool-specific module files for the Nextflow DSL2 community!

✭ 94

Nextflow modules pipelines workflows nf-core dsl2

Precision HLA typing from next-generation sequencing data

✭ 28

Nextflow python HTML Dockerfile workflow pipeline dna rna immunology hla optitype hla-typing personalized-medicine nf-core

RNA-seq analysis pipeline for detection gene-fusions

✭ 72

Nextflow groovy python Dockerfile HTML workflow rna-seq pipeline gene-fusion fusion rna fusion-genes nf-core

Nanopore demultiplexing, QC and alignment pipeline

✭ 82

Nextflow groovy r python perl HTML workflow nanopore pipeline alignment qc demultiplexing nf-core

A single-cell RNAseq pipeline for 10X genomics data

✭ 60

Nextflow groovy python HTML r workflow pipeline nf-core

A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences

✭ 36

Nextflow groovy python HTML workflow tree pipeline genomics mapping bacteria phylogeny bacterial nf-core bacterial-genome-analysis

Analysis of Chromosome Conformation Capture data (Hi-C)

✭ 45

Nextflow python groovy C++workflow pipeline hi-c chromosome-conformation-capture nf-core

UNDER DEVELOPMENT--- Analysis of long non-coding RNAs from RNA-seq datasets

✭ 24

workflow pipeline rna transcriptome rna-seq-analysis differential-expression lncrna non-coding nf-core long-non-coding

1-8 of 8 nf-core projects