848 Open source projects that are alternatives of or similar to Ngless

Intuitive local web frontend for the BLAST bioinformatics tool

Official git repository for Biopython (originally converted from CVS)

cython + htslib == fast VCF and BCF processing

Bayesian genotyper for structural variants

A powerful open source data warehouse system

Ultrafast sequence typing and gene detection from NGS raw reads

Analysing Capture Seq Count Data

GCP Essentials for Bioinformatics Researchers

A robust model for quantitative comparison of ChIP-Seq data sets.

Data and analysis for the Splatter paper

A faster lmm for GWAS. Supports GPU backend.

A simple command-line tool to download data from Joint Genome Institute databases

Pathogen-Host Analysis Tool - A modern Next-Generation Sequencing (NGS) analysis platform

Elastic, reproducible, and reusable genomic data science tools from R backed by cloud resources

SIRIUS is a software for discovering a landscape of de-novo identification of metabolites using tandem mass spectrometry. This repository contains the code of the SIRIUS Software (GUI and CLI)

Fast hash function for DNA sequences

dysgu-SV is a collection of tools for calling structural variants using short or long reads

Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes

An NGS read trimming tool that is specific, sensitive, and speedy. (production)

Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.

A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment

Provide R access to the NCI Genomic Data Commons portal.

An open-access bioinformatics text

(No maintenance) Detect gene fusion directly from raw fastq files

A collection of publications on comparison of high-throughput sequencing technologies.

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

(No maintenance) OpenGene, core libraries for NGS data analysis and bioinformatics in Julia

🌈Scaffold genome sequence assemblies using linked read sequencing data

Genomics Extension for SQLite

Predict plasmids from uncorrected long read data

GenomeTools genome analysis system.

Welcome to the website and github repository for the Genome Analysis Module. This website will guide the learning experience for trainees in the UBC MSc Genetic Counselling Training Program, as they embark on a journey to learn about analyzing genomes.

De novo assembly based variant calling pipeline for Illumina short reads

This library tackles the construction and efficient execution of computational chemistry workflows

BACNET is a Java based platform to develop website for multi-omics analysis

annotate a VCF with other VCFs/BEDs/tabixed files

[DEPRECATED] Bioinformatics and Computational Biology Infrastructure for Julia

A high-performance, Pythonic language for bioinformatics

Earl Grey: A fully automated TE curation and annotation pipeline

A comprehensive tutorial about GWAS and PRS

An open source platform for managing and analyzing biomedical big data

A modern genome browser built with JavaScript and HTML5.

A fast and sensitive gapped read aligner

HTS-compatible wrapper for IgBlast V-(D)-J mapping tool

Inference of ploidy and heterozygosity structure using whole genome sequencing data

A fast 23andMe genome text file parser, now superseded by arv

Python and C++ code for reading and writing genomics data.

C library for high-throughput sequencing data formats

Scripts to download genomes from the NCBI FTP servers

Efficient variant-call data storage and retrieval library using the TileDB storage library.

A versatile pairwise aligner for genomic and spliced nucleotide sequences

List of tools and resources related to the 10x Genomics GEMCode/Chromium system

Deep learning infrastructure for bioinformatics

A genome browser that shows long reads and complex variants better

Generate duplex/single consensus reads to reduce sequencing noises and remove duplications

📖🔬☕️ BioJava is an open-source project dedicated to providing a Java library for processing biological data.

Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

Analysis pipelines for sequencing data

A cool place to store your Hi-C