178 Open source projects that are alternatives of or similar to nidb

medical image visualization library and development toolkit

VisualQC : assistive tool to ease the quality control workflow of neuroimaging data.

Method container for computational neuroscience on brains.

Software platform for clinical neuroimaging studies

Database for experimental neuroscience laboratories

MATLAB/Octave GIfTI Library

Graph theory analysis of brain MRI data

Extended edit similarity measurement for high dimensional discrete-time series signal (e.g., multi-unit spike-train).

MNE-BIDS is a Python package that allows you to read and write BIDS-compatible datasets with the help of MNE-Python.

Reorganising NIfTI files from dcm2niix into the Brain Imaging Data Structure

A package for data-driven validation of neuron and ion channel models using SciUnit

Core methods and structures for neuroscience research in Julia.

MNE: Magnetoencephalography (MEG) and Electroencephalography (EEG) in Python

Multi-modal Image Registration And Connectivity anaLysis

dcm2nii DICOM to NIfTI converter: compiled versions available from NITRC

Brain Imaging Analysis Kit

Public release of The Cole-Anticevic Brain-wide Network Partition (CAB-NP)

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The open source toolbox for reproducible diffusion MRI-based microstructure estimation

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A publicly-editable collection of open computational neuroscience resources

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A list of schools and researchers in computational neuroscience

CS198-96: Intro to Neurotechnology @ UC Berkeley

TubeTK is an open-source toolkit for the segmentation, registration, and analysis of tubes and surfaces in images, developed by Kitware, Inc.

A brian2 extension to simulate spiking neural networks on GPUs

Easy whole-brain modeling for computational neuroscientists 🧠💻👩🏿‍🔬

A set of BIDS compatible datasets with empty raw data files that can be used for writing lightweight software tests.

Visualizer for large-scale and interactive ray-tracing of neurons

An Awesome List of Cognitive Science Resources

Mother of All BCI Benchmarks

code for storing neurodata images and image annotations

Generate custom Docker and Singularity images, and minimize existing containers

Brain Modeling Toolkit

a python based software for visualization of neuroanatomical and morphological data.

C++ library for simulation of multiscale neural field dynamics

Elephant is the Electrophysiology Analysis Toolkit

Distributed, Versioned, Image-oriented Dataservice

Python machine learning package based on sklearn API for multivariate data processing and statistical analysis of symmetric positive definite matrices via Riemannian geometry

Graphical experiment builder for the social sciences

A multi-purpose GPU-accelerated open-source suite for brain data visualization

A Parametric Framework to Generate Visual Illusions using Python

A Collection Python EEG (+ ECG) Analysis Utilities for OpenBCI and Muse

BrainFlow is a library intended to obtain, parse and analyze EEG, EMG, ECG and other kinds of data from biosensors

The ENIGMA Toolbox is an open-source repository for accessing 100+ ENIGMA statistical maps, visualizing cortical and subcortical surface data, and relating neuroimaging findings to micro- and macroscale brain organization. 🤠

Data and example scripts used in the paper `Inferring hidden structure in multilayered neural circuits`

Neuroscience information exchange format

CellExplorer is a graphical user interface, a standardized processing module and data structure for exploring and classifying single cells acquired using extracellular electrodes.

ERPLAB Toolbox is a free, open-source Matlab package for analyzing ERP data. It is tightly integrated with EEGLAB Toolbox, extending EEGLAB’s capabilities to provide robust, industrial-strength tools for ERP processing, visualization, and analysis. A graphical user interface makes it easy for beginners to learn, and Matlab scripting provides enormous power for intermediate and advanced users.

Parameterizing neural power spectra into periodic & aperiodic components.

Recordings of 10k neurons during spontaneous behaviors

cell detection in calcium imaging recordings

Fast spike sorting with drift correction for up to a thousand channels

The NeuroMorph analysis and visualization toolkit

Precision current source, with optional optical feedback, for driving LEDs and laser diodes

Blue Brain Python Optimisation Library

EntroPy: complexity of time-series in Python (DEPRECATED)

Deep learning integration for Nengo

NEURON Simulator

Collaborative Annotation Toolkit for Massive Amounts of Image Data