574 Open source projects that are alternatives of or similar to obi

A Python frontend to (Open Biomedical) Ontologies.

An ontology of cell types

Modular environmental exposures ontology

Evidence & Conclusion Ontology development site: Use ISSUES to request terms. See WIKI for how to request terms. See README for how to cite ECO. Visit our website for more project info.

python library for working with ontologies and ontology associations

PheKnowLator: Heterogeneous Biomedical Knowledge Graphs and Benchmarks Constructed Under Alternative Semantic Models

Faultless AST for Open Biomedical Ontologies in Python.

(subjective) overview of projects which are related both to python and semantic technologies (RDF, OWL, Reasoning, ...)

OWL and Semantic Web toolkit for Common Lisp, used for construction and reasoning over ontologies and ontology-structured data

Tools for working with KGCL

Mondo Disease Ontology

Storing ontologies/vocabularies from the web. Wish anybody can translate some of them.

Internationalisation of the HPO content

A lightweight C/C++ library for working with Web Ontology Language (OWL) ontologies

Medical action ontology

an Ontology SDK

The core repository for the FOODON food ontology project. This holds the key classes of the ontology; larger files and the results of text-mining projects will be stored in other repos.

Mobi is a decentralized, federated, and distributed graph data platform for teams and communities to publish and discover data, data models, and analytics that are instantly consumable.

ONT-API (OWL-API over Apache Jena)

A Rails application for biological ontologies

Explore the Plant Trait Ontology on the Planteome site.

The Knowledge Graph notebook. Apache license.

Schema and generated objects for biolink data model and upper ontology

Convert OWL to labeled property graph and import into Neo4J

Metadata and website for the Open Bio Ontologies Foundry Ontology Registry

A simple system for specifying OWL class design patterns for OBO-ish ontologies.

A community-driven ontology for the representation of environments

The Financial Industry Business Ontology (FIBO) defines the sets of things that are of interest in financial business applications and the ways that those things can relate to one another. In this way, FIBO can give meaning to any data (e.g., spreadsheets, relational databases, XML documents) that describe the business of finance.

Repository for the Plant Ontology

An ontology of gross anatomy covering metazoa. Works in concert with https://github.com/obophenotype/cell-ontology

The Semanticscience Integrated Ontology (SIO) provides a simple, integrated ontology of types and relations for rich description of objects, processes and their attributes.

SANSA Machine Learning Layer

RO is an ontology of relations for use with biological ontologies

Feature learning over RDF data and OWL ontologies

📛 A Python package for using ontologies, terminologies, and biomedical nomenclatures

Data transformation framework for LinkML data models

An experimental ontology containing key terms from Open Biological and Biomedical Ontologies (OBO)

📁 This repo makes it easy to download the raw audio files from AudioSet (32.45 GB, 632 classes).

No description or website provided.

Introduction to the Unix Shell for biologists

Introduction to Applied Mathematics and Informatics in Drug Discovery (AMIDD)

A fast 23andMe genome text file parser, now superseded by arv

Mapping-Assisted Targeted-Assembly for Metagenomics

Genotype Calling with Uncertainty from Sequencing Data in Polyploids 🍌🍓🥔🍠🥝

📊 Identify cell types and pathways affected by genetic risk loci.

Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics

A graphical editor for the specification and visualization of Graphol ontologies

micca - MICrobial Community Analysis

No description or website provided.

Generate duplex/single consensus reads to reduce sequencing noises and remove duplications

A library to build and execute typed scientific workflows

exploratory and interactive microbiome analyses based on heatmaps

Fast motif matching in R

Home of the Genomic Feature and Variation Ontology (GFVO)

Software for comparing contact maps from HiC, CaptureC and other 3D genome data.

Project metadata manager for PEPs in Python

PathwayMapper: An interactive and collaborative graphical curation tool for cancer pathways

Predict plasmids from uncorrected long read data

React rerelease of MSAViewer

A curated list of awesome bioinformatics software.