209 Open source projects that are alternatives of or similar to openscience

Open solution to the Google AI Object Detection Challenge 🍁

A curated list of reproducible research case studies, projects, tutorials, and media

ukbREST: efficient and streamlined data access for reproducible research of large biobanks

R interface to the Open Science Framework (OSF)

R package to interface with OpenML

FMA: A Dataset For Music Analysis

Github mirror of https://gitlab.orfeo-toolbox.org/orfeotoolbox/otb

Insight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dimensions.

Short course on reproducible science: what, why, how

Reproducible Data Science in Python (SciPy 2019 Tutorial)

Papers with code for single cell related papers

Package an R workspace and all dependencies as a Docker container

Sacred is a tool to help you configure, organize, log and reproduce experiments developed at IDSIA.

🐳 Containerize R Markdown documents for continuous reproducibility

Reproducible research and reusable acyclic workflows in Python. Execute code on HPC systems as if you executed them on your personal computer!

Examples and demos for ReproZip

Fully reproducible, open source scientific articles in LaTeX.

dcmjs is a javascript cross-compile of dcmtk (dcmtk.org).

Everware is about re-useable science, it allows people to jump right in to your research code.

A DSL for data-driven computational pipelines

Cookbook examples for the Insight Toolkit documented with Sphinx

awesome open list of pointers about open science for software and computational science

NOTE: This repo is archived. Please see https://github.com/benmarwick/rrtools for my current approach

Interactive Jupyter widgets to visualize images, point sets, and meshes in 2D and 3D

rrtools: Tools for Writing Reproducible Research in R

Future Gadget Laboratory

Cookbook examples for the Insight Toolkit documented with Sphinx

Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing

🔬 Empirical CLI

Future Gadget Machine

A library for creating and curating reproducible pipelines for scientific and industrial machine learning

A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies

Software Papers as Software Modules: Towards a Culture of Reusable Results

Source code for the CERN Analysis Preservation portal

ReproZip is a tool that simplifies the process of creating reproducible experiments from command-line executions, a frequently-used common denominator in computational science.

Kervolution implementation using TF2.0

Ten Simple Rules for Writing and Sharing Computational Analyses in Jupyter Notebooks

Live code in Pandoc Markdown

Guide for Reproducible Research and Data Science in Jupyter Notebooks

A toolbox for writing Sweave or other LaTeX-based papers and reports and to prettify the output of various estimated models.

Generate custom Docker and Singularity images, and minimize existing containers

Unifying Variational Autoencoder (VAE) implementations in Pytorch (NeurIPS 2022)

Avalanche: a End-to-End Library for Continual Learning.

A Collection of Variational Autoencoders (VAE) in PyTorch.

Formal Psychological Models of Categorization and Learning

Coding Standards for the USC Biostats group

Pythonic functions for creating and enhancing Hydra applications

PyTorch implementation of Hash Embeddings (NIPS 2017). Submission to the NIPS Implementation Challenge.

📦 Create a package or compendium structure

An R package for data screening

Lightweight, Python library for fast and reproducible experimentation 🔬

Collective Knowledge repository with actions to unify the access to different predictive analytics engines (scipy, R, DNN) from software, command line and web-services via CK JSON API:

Reproducible Research with Rmarkdown: data management, analysis, and reporting all-in-one

project page for creating a guide to reproducible research

Forecasting elevated levels of E. coli at Chicago beaches to provide proper warning to beach-goers.

Collection of popular and reproducible image denoising works.

The GenePattern Server web application

A setup script to generate ITK Python Wheels

⛔ ARCHIVED ⛔

Framework for Analysis of Class-Incremental Learning with 12 state-of-the-art methods and 3 baselines.