838 Open source projects that are alternatives of or similar to pblat

Discovering known and novel miRNAs from small RNA sequencing data

Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer

Browser computing unleashed!

Basecalling, alignment, assembly and deconvolution of Sanger Chromatogram trace files

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

Extended Memory Semantics - Persistent shared object memory and parallelism for Node.js and Python

A package for designing compact and comprehensive capture probe sets.

Napa.js: a multi-threaded JavaScript runtime

openmp examples

fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing

Códigos feitos para o curso de Multithreading com Java, no canal RinaldoDev do YouTube.

Kafka Workers is a client library which unifies records consuming from Kafka and processing them by user-defined WorkerTasks.

FluentDNA allows you to browse sequence data of any size using a zooming visualization similar to Google Maps. You can use FluentDNA as a standalone program or as a python module for your own bioinformatics projects.

Corium is a modern scripting language which combines simple, safe and efficient programming.

BS::thread_pool: a fast, lightweight, and easy-to-use C++17 thread pool library

A General-purpose Parallel and Heterogeneous Task Programming System

This is a high performance , very useful multi-curl tool written in php. 一个超级好用的并发CURL工具！！！(httpful，restful, concurrency)

Official code repository for GATK versions 4 and up

Goroutine analogue for Node.js, spreads I/O-bound routine calls to utilize thread pool (worker_threads) using balancer with event loop utilization. 🌱

Provides an alternative to PSjobs with greater performance and less overhead to run commands in the background, freeing up the console and allowing throttling on the jobs.

100% Vanilla Javascript Multithreading & Parallel Execution Library

SDK for GPU accelerated genome assembly and analysis

Automatic parallelization (lock-free multithreading thread) tool developed by Surparallel Open Source.Pelagia is embedded key value database that implements a small, fast, high-reliability on ANSI C.

Indigo: SNV and InDel Discovery in Chromatogram traces obtained from Sanger sequencing of PCR products

An adapter for enabling Rayon-based concurrency on the Web with WebAssembly.

Graph based multi genome aligner

Lock free hierarchical work scheduler

VieCut 1.00 - Shared-memory Minimum Cuts

Low to medium multithreaded Ubuntu Core honeypot coded in Python.

Project Planeverb is a CPU based real-time wave-based acoustics engine for games. It comes with an integration with the Unity Engine.

Client Server running code described with comments here.

A fluent interface to create mappings using Schema.org for Microdata and JSON-LD.

🌍 Create collaborative maps with your friends (and enemies)

User space POSIX-like file system in main memory

Humanitarian Project for Mapping North Korea

A Ruby GUI based on advanced rogue AP attack using the WPS

MUM&Co is a simple bash script that uses Whole Genome Alignment information provided by MUMmer (only v4) to detect Structural Variation

Alignment of RNAs

Direct LiDAR Odometry: Fast Localization with Dense Point Clouds

Easily Arrange Images with Patchwork Alongside ggplot2 Figures.

Pathogen-Host Analysis Tool - A modern Next-Generation Sequencing (NGS) analysis platform

Laravel parallel

The core parallel and shared memory library used by Hack, Flow, and Pyre

Python wrapper to parallelize GAMIT executions

Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads

scripts to align a given wave to its transcription using trained models by Kaldi

🚀 A sequencing simulator

Package to create a multi-modal MATSim network and schedule from public transit data (GTFS or HAFAS) and an OSM map of the area.

Does exactly what it says on the tin.

NeoCSV is an elegant and efficient standalone Smalltalk framework to read and write CSV converting to or from Smalltalk objects.

Actor framework for Dart. This package makes it easier to work with isolates, create clusters of isolates.

Speed up download of a single file with multiple HTTP GET connections running in parallel

This repository has been archived, currently maintained version is at https://github.com/iii-companion/companion

A parallel, fast solver for the scalar advection-diffusion and the incompressible Navier-Stokes equations based on semi-Lagrangian/Volume-Integral method.

Simple 2d finite volume solver for Euler equations using c++ kokkos library

Aligns text (lyrics) with monophonic singing voice (audio). The algorithm uses structural segmentation to segment the audio into structures and then uses hidden markov models to obtain alignment within segments. The final alignment is concatenation of time stamps of lyrics within the segments for each song.

A simple web scraping engine supporting concurrent and anonymous scraping

A Interface Builder configurable UIButton with a image icon

Protein structure comparison tools such as SSAP and SNAP

Fast, multi-reader, multi-writer, lockless data structures for parallel programming