50 Open source projects that are alternatives of or similar to phenomenet-vp

Rare variant test software for next generation sequencing data

What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.

Spark VCF data source implementation for Dataframes

echt rapid variant annotation and filtering

A modular annotation tool for genomic variants

VariantRetriever is a minimalist package for feature flagging

phenol: Phenotype ontology library

Multi-sample somatic variant caller

Learning the Variant Call Format

A novel management, annotation, and machine learning framework for analyzing cancer mutations

I used six classification techniques, artificial neural network (ANN), Support Vector Machine (SVM), Decision tree (DT), random forest (RF), Logistics Regression (LR) and Naïve Bayes (NB)

📊Evaluating, filtering, comparing, and visualising VCF

Backend Server for CIViC Project

simple viewer for variant call format using htslib

PEPPER-Margin-DeepVariant

Harbol is a collection of data structure and miscellaneous libraries, similar in nature to C++'s Boost, STL, and GNOME's GLib

Microscopic Markov Chain Approach to model the spreading of COVID-19

📱 Tracking the impact of COVID-19 cases based on your location, built in Flutter

Diabetic Retinopathy is a very common eye disease in people having diabetes. This disease can lead to blindness if not taken care of in early stages, This project is a part of the whole process of identifying Diabetic Retinopathy in its early stages. In this project, we'll extract basic features which can help us in identifying Diabetic Retinopa…

An NLP framework for clinical phenotyping. Docker | Python | Solr | OMOP. http://claritynlp.readthedocs.io/en/latest/

🚀 Handy dynamic styles utilities for React Native and React Native Web.

simuG: a general-purpose genome simulator

Mondo Disease Ontology

Recursive Variant: A simple library for Recursive Variant Types

A scalable styled-component theming system that fully leverages JavaScript as a language for styles authoring and theming at both local and global levels.

xHLA: Fast and accurate HLA typing from short read sequence data

Indigo: SNV and InDel Discovery in Chromatogram traces obtained from Sanger sequencing of PCR products

A desktop application to fetch Wikipedia,Google,Disease results and save them as text file,in database.Have a Section to search details about doctors in location

Unleash is the open source feature toggle service.

Web client for CIViC: Clinical Interpretations of Variants in Cancer

(WIP) best-practices workflow for rare disease

Simple tagged unions

MTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumina whole genome sequence data of Mycobacterium tuberculosis complex isolates.

Genomics using open source tools, running on GCP or AWS

Variant types in TypeScript

Lollipop-diagram to interactively visualize genetic mutations

pathoscore evaluates variant pathogenicity tools and scores.

Numerical Encoding for Human Genetic Variants

Ordo: A minimalist language with row polymorphism

API for Current cases and more stuff about COVID-19 and Influenza

3D hotspot mutation proximity analysis tool

Source code for the EpiEstim app.

API for linked biological knowledge

Learn interpretable computational phenotyping models from k-merized genomic data

Internationalisation of the HPO content

Genomic VCF to tab-separated values

The Platinum Genomes Truthset

Intersect multiple VCF files with haplotype awareness

Powerful statistics for VCF files

Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data