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Top 7 vcf-files open source projects

Intersect multiple VCF files with haplotype awareness

✭ 19

python haplotypes intersection variant-calls compare-files vcf-files

Powerful statistics for VCF files

✭ 32

python Makefile Dockerfile vcf vcf-files vcfstats

Spark VCF data source implementation for Dataframes

✭ 15

scala spark genomics vcf variants dataframe genotype spark-sql vcf-files lifeomic team-clinical-intelligence

Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data

A phenotype-based tool for variant prioritization in WES and WGS data

✭ 31

java python groovy variants disease phenotypes variant-annotations variant-analysis omim vcf-files translationalscience prioritize-disease-variants rare-variants synthetic-genomes

learning vcf file

Learning the Variant Call Format

✭ 104

perl shell groovy r vcf gatk vcftools bcftools vcf-files call-variants vcf-format multi-sample-vcf

Rare variant test software for next generation sequencing data

✭ 114

C++fortran Makefile c r shell python gwas kernel genetics ngs next-generation-sequencing variants meta-analysis genotype umich skat association-analysis rare-variant vcf-files

1-7 of 7 vcf-files projects