167 Open source projects that are alternatives of or similar to python-bioimage-analysis-tutorial

A python library for advanced lattice light-sheet image analysis

Research on polio / protein folding.

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Blender plugin to process biological data and molecular work.

A curated list of awesome cytodata resources

No description or website provided.

A web application to visualize and edit the pathway models represented by SBGN Process Description Notation

A library of free open source icons for science illustrations in biology and chemistry

plant collections manager (desktop version)

Library that helps to implement the QuadTree in android, by using splitting images

No description or website provided.

MAINTAINER WANTED -- Decode embedded EXIF meta data from image files written in Pure Golang

Automated 3D cell detection and registration of whole-brain images

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A list of free and open forensics analysis tools and other resources

Cookbook examples for the Insight Toolkit documented with Sphinx

👁️ An authorial set of fundamental Python recipes on Computer Vision and Digital Image Processing.

Collection of mathematical morphology methods and plugins for ImageJ

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Lattice light-sheet post-processing utility.

GARI (Genetic Algorithm for Reproducing Images) reproduces a single image using Genetic Algorithm (GA) by evolving pixel values.

🔬🍸 Home of the ImageJ BAR: A collection of Broadly Applicable Routines for ImageJ

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An R package for conducting co-localization analysis. Edit

PETAL (ParallEl paThways AnaLyzer): a Python tool for deep biological pathway analysis

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Cython bindings for fpzip, a floating point image compression algorithm.

Bioclipse2 Core.

Datastructures and algorithms for working with genetic variation

PiGallery: AI-powered Self-hosted Secure Multi-user Image Gallery and Detailed Image analysis using Machine Learning, EXIF Parsing and Geo Tagging

Julia Catalyst.jl importers for various reaction network file formats like BioNetGen and stoichiometry matrices

Sequence alignment tools

A unified framework for example-based texture synthesis, developed alongside my master's thesis.

Object detector from HOG + Linear SVM framework

Multiple sequence alignment with top benchmark scores scalable to thousands of sequences. Generates replicate alignments, enabling assessment of downstream analyses such as trees and predicted structures.

Interactive Image similarity and Visual Search and Retrieval application

This repository explores the variety of techniques commonly used to analyze and interpret images. It also describes challenging real-world applications where vision is being successfully used, both for specialized applications such as medical imaging, and for fun, consumer-level tasks such as image editing and stitching, which students can apply…

Protein structure comparison tools such as SSAP and SNAP

ggimg: Graphics Layers for Plotting Image Data with ggplot2

Predict AMPs in (meta)genomes and peptides

Toolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.

An R package for plotting microtitre plates

3D Slicer Module for connecting to model repository and use models for image analysis.

A web application to visualize and edit pathway models

RNAcentral website source code

Bioinformatics toolkits for manipulating sequence, alignment, and phylogenetic tree files

Speed up coding/extending image analysis in Python.

Powershell module to access Microsoft Azure Machine learning RESTful API's or Microsoft cognitive services

Matlab code for the paper "A survey of orthogonal moments for image representation: Theory, implementation, and evaluation"

A machine learning exercise, using KNN to classify deforested areas

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GCModeller: genomics CAD(Computer Assistant Design) Modeller system in .NET language