468 Open source projects that are alternatives of or similar to Qqman

De novo genome assembly and multisample variant calling

Relational Operators for Intervals

Welcome to the website and github repository for the Genome Analysis Module. This website will guide the learning experience for trainees in the UBC MSc Genetic Counselling Training Program, as they embark on a journey to learn about analyzing genomes.

R package to interface with OpenML

De novo assembly based variant calling pipeline for Illumina short reads

RADseq Data Exploration, Manipulation and Visualization using R

Import Climate Indices into R

Wrapper for the Intro.js library

Earl Grey: A fully automated TE curation and annotation pipeline

Nanosecond Resolution Time Functionality for R

CRAN Task View: Empirical Finance

Easy Handling Discrete Time Markov Chains

demography package for R

R Package: Parallel Distance Matrix Computation using Multiple Threads

Miscellaneous R functions

variant expressions, annotation, and filtering for great good.

CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies

Examples of using Rcpp to interface R and C++

Encode Categorical Features

Bayesian genotyper for structural variants

♛ Chess package for R

A versatile pairwise aligner for genomic and spliced nucleotide sequences

CRAN OpenData Task View

📊 mschart: office charts from R

📊 An R package for interactively exploring UCSC Xena https://xenabrowser.net/datapages/

🔬🐛 Rapid 16s rRNA identification from isolate FASTQ files

An ontology of cell types

A fast whole-genome aligner based on de Bruijn graphs

A curated list of awesome bioinformatics software.

The Scott-Knott Effect Size Difference (ESD) test

🚿A Tidy Tool for Phylogenetic Tree Data Manipulation

Seamless embedding of R in C++ programs

netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation

Fast alignment and preprocessing of chromatin profiles

Practical volume computation and sampling in high dimensions

Task View: PackageDevelopment

Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI

Assembling the cause of phenotypes and genotypes from NGS data

A place for the development version of the changepoint package on CRAN.

Official Git repository of R package meta

Data intensive science for everyone.

An open-access bioinformatics text

Search R packages on CRAN

An R package for implementing augmented network log anomaly detection procedures

🚀 R package: future: Unified Parallel and Distributed Processing in R for Everyone

Feature Annotation Location Description Ontology

Shiny applications internationalisation made easy

📓Notebook of Climente-González et al. (2017), The Functional Impact of Alternative Splicing in Cancer.

Scalable genomic data analysis.

Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.

Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins

R wrapper for highcharts

A cool place to store your Hi-C

Machine Learning in R

Add More Interactivity to htmlwidgets

AQUAS TF and histone ChIP-seq pipeline

List of tools and resources related to the 10x Genomics GEMCode/Chromium system

igv.js server and automatic configuration to view bam/cram/vcf/bed. "working in under 1 minute"

Calculating Marginal Effects and Levels with Errors Using the Delta Method