398 Open source projects that are alternatives of or similar to React Cytoscapejs

Seven Bridges API Client, CWL Schema, Meta Schema, and SDK Helper in R

Provide R access to the NCI Genomic Data Commons portal.

R package for analyzing single-cell RNA-seq data

Useful bioinformatic scripts

A versatile pairwise aligner for genomic and spliced nucleotide sequences

My own tools code for NGS data analysis (Next Generation Sequencing)

INDRA (Integrated Network and Dynamical Reasoning Assembler) is an automated model assembly system interfacing with NLP systems and databases to collect knowledge, and through a process of assembly, produce causal graphs and dynamical models.

An open-access bioinformatics text

UNCURL is a tool for single cell RNA-seq data analysis.

Unsupervised domain adaptation method for relation extraction

Proof-of-concept seq-to-graph mapper and graph generator

Fast and flexible ORF finder

A full spaCy pipeline and models for scientific/biomedical documents.

An ultra-sensitive and precise tool for characterizing T cell CDR3 sequences in TCR-seq and RNA-seq data.

A collection of scripts and notes related to genomics and bioinformatics

Method to optimally select samples for validation and resequencing

🐣 locally query the ncbi taxonomy

Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.

Package for fetching metadata and downloading data from SRA/ENA/GEO

Compute N50/NG50 and auN/auNG

Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model

🐛 How to use CENTIPEDE to determine if a transcription factor is bound.

Inference of ploidy and heterozygosity structure using whole genome sequencing data

WebGL Heatmap Viewer for Big Data and Bioinformatics

Efficient variant-call data storage and retrieval library using the TileDB storage library.

CoNekT (short for Co-expression Network Toolkit) is a platform to browse co-expression data and enable cross-species comparisons.

Reads simulator

A package for designing compact and comprehensive capture probe sets.

Fast & accurate alignment of barcoded short-reads

2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF

Antimicrobial Resistance Identification By Assembly

An NGS read trimming tool that is specific, sensitive, and speedy. (production)

(No maintenance) Detect gene fusion directly from raw fastq files

Read and write FASTQ and FASTA efficiently from Python

parallel fastq-dump wrapper

Fast hash function for DNA sequences

JAMP - Just Another Metabarcoding Pipeline

Bioinformatics pipeline for SARS-CoV-2 sequencing at CZ Biohub

A DSL for data-driven computational pipelines

Simple pure Python SAM parser and objects for working with SAM records

an implementation of NSGA-II in java

Elastic, reproducible, and reusable genomic data science tools from R backed by cloud resources

RAxML Next Generation: faster, easier-to-use and more flexible

Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.

Data and analysis for the Splatter paper

Implementation of Neural Distance Embeddings for Biological Sequences (NeuroSEED) in PyTorch (NeurIPS 2021)

FastQC port to Qt5: A quality control tool for high throughput sequence data.

Streamlining SLAM-seq analysis with ultra-high sensitivity

A robust model for quantitative comparison of ChIP-Seq data sets.

An R package for reproducible and automated ADMIXTOOLS analyses

Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation

Data intensive science for everyone.

🔬 BEDOPS: high-performance genomic feature operations

A community-maintained repository of cancer clinical knowledge bases and databases focused on cancer variants.

A powerful open source data warehouse system

Protein Graph Library

Fast Reference-Guided Scaffolding of Genome Assembly Contigs. RagTag, the successor to RaGOO, is now available here: https://github.com/malonge/RagTag

HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.

Model and predict short DNA sequence features with neural networks

The Microbiome Interpretable Temporal Rule Engine