140 Open source projects that are alternatives of or similar to Repo-Bio

No description or website provided.

Global Biotic Interactions provides access to existing species interaction datasets

Understand DNA structure and how machine learning can be used to work with DNA sequence data.

A tool to plot significant regions of GWAS

A list of web-based interactive biological data visualizations.

CoRA Docs

The main repository for the development of the evolution game Thrive.

Numerical Encoding for Human Genetic Variants

Genome-wide imputation pipeline

In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more

Chainer Chemistry: A Library for Deep Learning in Biology and Chemistry

A package for designing activity-informed nucleic acid diagnostics for viruses.

A modern genome browser built with JavaScript and HTML5.

LDraw — awesome software, file format, parts library and model repository (3D models of LEGO® and LEGO-compatible bricks)

Therapeutics Data Commons: Machine Learning Datasets and Tasks for Therapeutics

Manhattan plot Generator

Curated (meta)list of resources for Biology.

Efficient pythonic random access to fasta subsequences

Precision current source, with optional optical feedback, for driving LEDs and laser diodes

World Register of Marine Species R client

plant collections manager (desktop version)

A Convolutional Neural Network for Segmenting and Counting Cells in Microscopy Images

Rare variant test software for next generation sequencing data

Hardware and software for accessible, extensible, and scalable bioreactors. Built on Raspberry Pi.

Forward-time simulation in Python using fwdpp

An open-access bioinformatics text

A Framework for Coalescent Simulation in R

Feature Annotation Location Description Ontology

Fast and Accurate CE-, GC- and LC-MS(/MS) Data Processing

An R package for plotting microtitre plates

The consensus GEM for Saccharomyces cerevisiae

Datastructures and algorithms for working with genetic variation

No description or website provided.

This is the code behind the www.impute.me site. It contains algorithms for personal genome analysis, including imputation and polygenic risk score calculation

A web application to visualize and edit pathway models

A fast 23andMe genome text file parser, now superseded by arv

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

A standalone and free application to explore genetics variations from VCF file

Jupyter Notebooks for learning the PyRosetta platform for biomolecular structure prediction and design

Julia Catalyst.jl importers for various reaction network file formats like BioNetGen and stoichiometry matrices

A collection of scripts and notes related to genomics and bioinformatics

A taxonomic toolbelt for R

Analysis pipelines for sequencing data

Predict AMPs in (meta)genomes and peptides

Predicting Future Influenza Virus Sequences with Machine Learning

A powerful open source data warehouse system

Data intensive science for everyone.

Ultrafast sequence typing and gene detection from NGS raw reads

Python and C++ code for reading and writing genomics data.

Ten Quick Tips for Deep Learning in Biology

16,432 Free Yara rules created by

A data-driven approach for interactively synthesizing diverse images from semantic label maps.

Blender plugin to process biological data and molecular work.

Protein order and disorder data for Keras, Tensor Flow and Edward frameworks with automated update cycle made for continuous learning applications.

Chemical reaction network and systems biology interface for scientific machine learning (SciML). High performance, GPU-parallelized, and O(1) solvers in open source software

Build, share, and embed visualizations of metabolic pathways.

Pyro models of SARS-CoV-2 variants

Resource of human chromosome schematics & images

The software behind Chai's open-source Real-Time PCR instrument