864 Open source projects that are alternatives of or similar to Riddle

Curated (meta)list of resources for Biology.

Highly customizable, ambiguity-aware dotplots for visual sequence analyses

INDRA (Integrated Network and Dynamical Reasoning Assembler) is an automated model assembly system interfacing with NLP systems and databases to collect knowledge, and through a process of assembly, produce causal graphs and dynamical models.

Java utilities for Bioinformatics

Global Biotic Interactions provides access to existing species interaction datasets

A powerful open source data warehouse system

MetaSRA: normalized sample-specific metadata for the Sequence Read Archive

Therapeutics Data Commons: Machine Learning Datasets and Tasks for Therapeutics

DOM Text Based Multiple Sequence Alignment Library

Ten Quick Tips for Deep Learning in Biology

Biological sequences for the julia language

A modern genome browser built with JavaScript and HTML5.

Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs

[DEPRECATED] Bioinformatics and Computational Biology Infrastructure for Julia

An open-access bioinformatics text

Scripts to download genomes from the NCBI FTP servers

Python Programming for Biologists

MyGene.info: A BioThings API for gene annotations

Structural variant toolkit for VCFs

Speech Recognition model based off of FAIR research paper built using Pytorch.

A collection of 500+ survey papers on Natural Language Processing (NLP) and Machine Learning (ML)

🐥A PyTorch implementation of OpenAI's finetuned transformer language model with a script to import the weights pre-trained by OpenAI

Official Pytorch code for (AAAI 2020) paper "Capsule Routing via Variational Bayes", https://arxiv.org/pdf/1905.11455.pdf

Project Home repo for Central Dockerfile and Project-wide issues

An interactive web tool for quality control of DNA sequencing data

Deep Learning Toolkit for Medical Image Analysis

Deep Neural Network Sandbox for JavaScript.

Bayesian genotyper for structural variants

Bioinformatics Workbook repository

🦄 State-of-the-Art Conversational AI with Transfer Learning

Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data

Pharmaceutical Modeling and Simulation for Nonlinear Mixed Effects (NLME), Quantiative Systems Pharmacology (QsP), Physiologically-Based Pharmacokinetics (PBPK) models mixed with machine learning

Books, papers and links to latest research in ML/AI

A robust and fast clustering method for amplicon-based studies

A fast whole-genome aligner based on de Bruijn graphs

TensorFlow-based neural network library

Provides access to complex Bioinformatics software (even BioLinux!) in just one command.

A curated list of awesome Bioinformatics libraries and software.

Conda recipes for the bioconda channel.

Tutorials, assignments, and competitions for MIT Deep Learning related courses.

Minimal and clean examples of machine learning algorithms implementations

Protein-Level ASSembler (PLASS): sensitive and precise protein assembler

An Elegant Neural Network User Interface to build drag-and-drop neural networks, train in the browser, visualize during training, and export to Python.

MOLGENIS - for scientific data: management, exploration, integration and analysis.

A simple JavaScript neural network framework.

brief introduction to Python for neural networks

Deep Learning for Automatic Pneumonia Detection, RSNA challenge

Robust and efficient workflows using a simple language agnostic approach

An implementation of DiscoGAN in tensorflow

The START App: R Shiny Transcriptome Analysis Resource Tool

An attempt at a PyTorch implimentation of "Super SloMo: High Quality Estimation of Multiple Intermediate Frames for Video Interpolation"

A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.

List of tools and resources related to the 10x Genomics GEMCode/Chromium system

Flexible genotype query among 30,000+ samples whole-genome

Solutions to assignments of Coursera Specializations - Deep learning, Machine learning, Algorithms & Data Structures, Image Processing and Python For Everybody

A Tensorfflow implementation of Attend, Infer, Repeat

😎 A curated list of software and resources for exploring and visualizing (browsing) expression data 😎

📝 Подборка ресурсов по машинному обучению

Post-analysis of immune repertoire sequencing data