495 Open source projects that are alternatives of or similar to rnafusion

RNASeq pipeline

UNDER DEVELOPMENT--- Analysis of long non-coding RNAs from RNA-seq datasets

Fast and accurate gene fusion detection from RNA-Seq data

Precision HLA typing from next-generation sequencing data

Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.

Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders

An automated RNA-seq pipeline using Nextflow

A graphical user interface for distributed data processing of high throughput genomics

Automated generation of tailored bioinformatics Jupyter Notebooks via a user interface.

Analysis of Chromosome Conformation Capture data (Hi-C)

SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data

A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences

Software for measuring poly(A) tail length and 3′-end modifications using a high-throughput sequencer

A single-cell RNAseq pipeline for 10X genomics data

Nanopore demultiplexing, QC and alignment pipeline

水下图像增强融合算法-matlab

Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing

A pure bash clojureish CI pipeline

🔬 De novo assembly of nanopore reads using nextflow

Helper for dealing with secrets in kubernetes.

🇨🇳 MyDataHarbor是一个致力于解决任意数据源到任意数据源的分布式、高扩展性、高性能、事务级的数据同步中间件。帮助用户可靠、快速、稳定的对海量数据进行准实时增量同步或者定时全量同步，主要定位是为实时交易系统服务，亦可用于大数据的数据同步（ETL领域）。

A lightweight, distributed workflow system

Towhee is a framework that is dedicated to making neural data processing pipelines simple and fast.

An example of how to run a Golang project in Docker in a Buildkite pipeline

A CMS for World of Warcraft private servers

HTML processing filters and utilities in Go version

tfa is a 2fa cli tool that aims to help you to generate 2fa code on CI/CD pipelines.

A pipeline to select optimal markers for microbial phylogenomics and species tree estimation using coalescent and concatenation approaches

R pipeline for computing persistent homology in topological data analysis. See https://doi.org/10.21105/joss.00860 for more details.

minimalistic nucleic acid folding

🐍 Snakefiles for common RNA-seq data analysis workflows.

A library to facilitate machine learning on multi-dimensional images.

The Rx Asset Management System for motion picture production

Pytorch Implementation of GoEmotions 😍😢😱

List of IARC bioinformatics nextflow pipelines

Framework for Creating Pipeline Software

Tool for parsing outputs from fusion detection tools. Part of a nf-core/rnafusion pipeline. Checkout a live demo at https://matq007.github.io/fusion-report/example/

No description or website provided.

create a jenkins pipeline which uses terraform to manage AWS resources

SalmonTE is an ultra-Fast and Scalable Quantification Pipeline of Transpose Element (TE) Abundances

🚀 Automate versioning, changelog creation, README updates and GitHub releases using GitHub Actions,npm, docker or bash.

A rapid http(s) benchmark tool written in Go

Multimodal sentiment analysis using hierarchical fusion with context modeling

Differential expression (DE); gene set Enrichment Analysis (GSEA); single cell RNAseq studies (scRNAseq)

An example of how to run Rails CI and test steps in parallel with Docker and Buildkite

This code is used to build & run a Docker container for performing predictions against a Spark ML Pipeline.

A pipelined implementation of the MIPS processor featuring hazard detection as well as forwarding

A python library to manipulate and transform indexable data (lists, arrays, ...)

Make it possible to chain regular functions

A curated collection of publicly available resources on how companies around the world practice DevOps

TransPi – a comprehensive TRanscriptome ANalysiS PIpeline for de novo transcriptome assembly

Content builder library for MonoGame.

Catalyst.Classification

Extensible streaming ingestion pipeline on top of Apache Spark

Plugin for Jenkins v2.138.2 or later, that triggers job builds on Bitbucket's push and pull request events.

VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies

This module allows a developer to upload SAPUI5/OpenUI5 sources into a SAP NetWeaver ABAP system.

Continuous Integration Platform

DANA: Dimension-Adaptive Neural Architecture (UbiComp'21)( ACM IMWUT)

Show Me A Graph - Command Line Graphing