107 Open source projects that are alternatives of or similar to RosettaDesign

Preforms De novo protein design using machine learning and PyRosetta to generate a novel protein structure

A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design

Pdb and Vim integration

A parser for Microsoft PDB (Program Database) debugging information

Generate API documentation from Markdown

Reactive extension for Backbone

A cheatsheet for the Python Debugger (pdb)

Guided Conditional Wasserstein GAN for De Novo Protein Design

Materials informatics framework for ab initio data repositories

Pytest PuDB debugger integration

A tool which allows you to edit source code of any MSVC C++ project live at runtime

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Application to assign secondary structure to proteins

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Implementation of trRosetta and trDesign for Pytorch, made into a convenient package, for protein structure prediction and design

Tool for PDB generation from IDA Pro database

Variants of Vision Transformer and its downstream tasks

Full-screen console debugger for Python

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pdb + Rich library

Converts between Windows PDB and Portable PDB formats.

📖 mmCIF support for hybrid/integrative models

Backbone's example TODO app with React Components for views

ReClassEx

pdb++, a drop-in replacement for pdb (the Python debugger)

📖🔬☕️ BioJava is an open-source project dedicated to providing a Java library for processing biological data.

MOLeculAR structure annoTator

Pytorch/Python3 implementation of DeepAccNet, protein model accuracy evaluator.

Utility to resolve SQL Server callstacks to their correct symbolic form using just PDBs and without a dump file

Source code generated in the Backbone.js tutorial series

Syntax highlighting for computational biology

State based router for MarionetteJS

A tool to make Windows builds reproducible.

Fitness landscape exploration sandbox for biological sequence design.

Remote vanilla PDB (over TCP sockets).

BackboneJS compatibility layer for React-MVx MVVM framework.

PDBRipper is a utility for extract an information from PDB-files.

Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm

.NET Decompiler with support for PDB generation, ReadyToRun, Metadata (&more) - cross-platform!

Just another tool to download specify Symbol (.pdb) files

Syntax highlighting for computational biology

Debug Python code within a Docker container remotely from your terminal using pudb

A Python API for the RCSB Protein Data Bank (PDB)

Fetch PDB symbols directly from Microsoft's symbol servers

Monte Carlo and Molecular Dynamics Simulation Package

detectron2 backbone: resnet18, efficientnet, hrnet, mobilenet v2, resnest, bifpn

Some useful Tips and Tricks to speed up the data analysis process in Python.

NoPdb: Non-interactive Python Debugger

gevent tools

Protein structure comparison tools such as SSAP and SNAP

A simple tutorial about effectively using pdb

Modified RefineDet

Transform Backbone views to React components and vice versa

Neovim thin wrapper for GDB, LLDB, PDB/PDB++ and BashDB

A demo of using socket.io + backbone.js to create a simple chatroom service.

TeamCity Symbol Server plugin

Rosetta FunFolDes – a general framework for the computational design of functional proteins.

Benchmarking common tasks on proteins in various languages and packages

Protein Secondary Structure predictor using Convolutional Neural Networks

A dependency-free cross-platform swiss army knife for PDB files.