441 Open source projects that are alternatives of or similar to scATAC-pro

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

No description or website provided.

PECA is a software for inferring context specific gene regulatory network from paired gene expression and chromatin accessibility data

Cell type specific enrichments using finemapped variants and quantitative epigenetic data

A graphical user interface for distributed data processing of high throughput genomics

Function Composition for OpenFaaS

🔬 BEDOPS: high-performance genomic feature operations

Airbyte is an open-source EL(T) platform that helps you replicate your data in your warehouses, lakes and databases.

The safe post-production pipeline - https://getavalon.github.io/2.0

High performance transport protocol for distributed applications.

FlowCraft: a component-based pipeline composer for omics analysis using Nextflow. 🐳📦

BatchFlow helps you conveniently work with random or sequential batches of your data and define data processing and machine learning workflows even for datasets that do not fit into memory.

Old archived draft proposal for smart pipelines. Go to the new Hack-pipes proposal at js-choi/proposal-hack-pipes.

A CLI for interacting with Tekton!

VectorSQL is a free analytics DBMS for IoT & Big Data, compatible with ClickHouse.

Clone identification from single-cell data

A server that pulls and parses MySQL binlog, pushs change data into different sinks like Kafka.

🐟 High Performance Computing over Kubernetes - Core Repo 🎣

Learn how to build a CI/CD pipeline for SAM-based applications

nextNEOpi: a comprehensive pipeline for computational neoantigen prediction

Fluid dynamics component of Chemical Engineering Design Library (ChEDL)

Identify hardcoded secrets and dangerous behaviours

Pipeline Extension for Live Trading

Dashboard for your Deployment pipeline https://dashboardhub.io/

This repo is no longer updated. Please see https://github.com/Autodesk/maya-usd

Jenkins实践文档 最新站点地址: http://www.idevops.site

Python library for creating data pipelines with chain functional programming

zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs

An optimized docker image includes Android, Kotlin, Flutter sdk.

pypyr task-runner cli & api for automation pipelines. Automate anything by combining commands, different scripts in different languages & applications into one pipeline process.

Short course on the targets R package

A repository for setting up a RNAseq workflow

A package that makes it trivial to create and evaluate machine learning pipeline architectures.

Open Source Pipeline for Maya, Houdini, 3ds Max and Nuke .

🏭 PDF text extraction pipeline: self-hosted, local-first, Docker-based

A list of resources and tutorials for those doing programming in Unity.

High-throughput Redis client for Go with implicit pipelining

云研发，是一种生于云上的闭环 + 代码化的软件开发方式。它可以让业务人员、开发人员、运营人员等在同一个云端共同协作、透明化地完成整个软件的生命周期（需求、设计、编码、构建、部署、运营），而非相互隔离，又或者是借助于多个软件才能完成工作。

🤖🎩assume-role-arn allows you to easily assume an AWS IAM role in your CI/CD pipelines, without worrying about external dependencies.

Kubernetes operator to manage installation, updation and uninstallation of tektoncd projects (pipeline, …)

Provides guidance for fast ETL jobs, an IDataReader implementation for SqlBulkCopy (or the MySql or Oracle equivalents) that wraps an IEnumerable, and libraries for mapping entites to table columns.

spacy-wordnet creates annotations that easily allow the use of wordnet and wordnet domains by using the nltk wordnet interface

Software for exploration of gene expression data from single-cell RNA sequencing.

Elastic Crontab System 简单易用的分布式定时任务管理系统

An end-to-end machine learning and data mining framework on Hadoop

Open solution to the Toxic Comment Classification Challenge

The magic message bus

mito ETL tool

LAMA - automatic model creation framework

Cloud ready pure-python streaming data pipeline library

HMMRATAC peak caller for ATAC-seq data

c++ LINQ -like library of higher-order functions for data manipulation

A hands-on DevOps course covering the culture, methods and repeated practices of modern software development involving Packer, Vagrant, VirtualBox, Ansible, Kubernetes, K3s, MetalLB, Traefik, Docker-Compose, Docker, Taiga, GitLab, Drone CI, SonarQube, Selenium, InSpec, Alpine 3.10, Ubuntu-bionic, CentOS 7...

Machine learning platform for Web developers

🔊 Play sounds while and after shell jobs complete

MorphL Community Edition uses big data and machine learning to predict user behaviors in digital products and services with the end goal of increasing KPIs (click-through rates, conversion rates, etc.) through personalization

A Drone plugin for caching current workspace files between builds to reduce your build times

Deploy machine learning projects developed in Python, to Kubernetes. Accelerated MLOps 🚀

Demo of Jenkins Configuration-As-Code with Docker and Groovy Hook Scripts

☔️ => ⛅️ => ☀️