507 Open source projects that are alternatives of or similar to Seqan3

VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.

Cross-platform normalization enables machine learning model training on microarray and RNA-seq data simultaneously

A curated list of bioinformatics bench-marking papers and resources.

Software for comparing contact maps from HiC, CaptureC and other 3D genome data.

Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).

Build and maintain multiple custom conda environments all in once place.

A Practical and Efficient NCBI Taxonomy Toolkit

Earl Grey: A fully automated TE curation and annotation pipeline

HTS-compatible wrapper for IgBlast V-(D)-J mapping tool

A fast 23andMe genome text file parser, now superseded by arv

A genome browser that shows long reads and complex variants better

Generate duplex/single consensus reads to reduce sequencing noises and remove duplications

Create regional association plots from GWAS or meta-analysis

Predict plasmids from uncorrected long read data

SortMeRNA: next-generation sequence filtering and alignment tool

Examples using Clustergrammer2 to explore high-dimensional datasets.

GeneValidator: Identify problems with predicted genes

VirNet: A deep attention model for viral reads identification

Python library to parse, format, validate, normalize, and map sequence variants. `pip install hgvs`

Create beautiful and graphically scalable UI controls for your C#/WPF apps.

Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

Automated statistical and functional fine-mapping pipeline with extensive API access to datasets.

A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)

Introduction to the Unix Shell for biologists

MetaSRA: normalized sample-specific metadata for the Sequence Read Archive

Introduction to Applied Mathematics and Informatics in Drug Discovery (AMIDD)

Annotated data.

Genotype Calling with Uncertainty from Sequencing Data in Polyploids 🍌🍓🥔🍠🥝

Comprehensive toolkit for generating various numerical features of protein sequences

Modern bundler built on Rollup with couple more features, such as multiple entry points, presets, better configuration experience and more.

pymzML - an interface between Python and mzML Mass spectrometry Files

exploratory and interactive microbiome analyses based on heatmaps

Snakemake-based workflow for detecting structural variants in WGS data

PathwayMapper: An interactive and collaborative graphical curation tool for cancer pathways

Spectre.css - A Lightweight, Responsive and Modern CSS Framework

A curated list of awesome bioinformatics software.

课题组每周研讨会

SIMD-accelerated library for computing global and X-drop affine gap penalty sequence-to-sequence or sequence-to-profile alignments using an adaptive block-based algorithm.

Demonstrating best practices for bioinformatics command line tools

Read DNA sequences from colourful Microsoft Word documents

A lightweight immune repertoire browser

Fast alignment and preprocessing of chromatin profiles

Toolset for SV simulation, comparison and filtering

Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.

A collection of publications on comparison of high-throughput sequencing technologies.

An image build orchestrator for the modern web

⏱️ Single-header C++11 RDTSCP clock and timing utilities released into the public domain.

A computational library for learning and evaluating biological knowledge graph embeddings

A Modern, Scalable , Graceful, Easy Use data structure validator

Custom relay compiler which supports persisted queries

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

UNCURL is a tool for single cell RNA-seq data analysis.

karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome

GenomeTools genome analysis system.

Trait introspection and concept creator for C++11

Genome assembly evaluation tool

BioGrakn Knowledge Graph

HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.

Characterization of Germline variants

Modern open source C++ FIX framework featuring complete schema customisation, high performance and fast development.