35 Open source projects that are alternatives of or similar to Sierra

Clone identification from single-cell data

Switch desktops on your Mac with any mouse

Tutorial for a full working Mac OS (10.11 up to 11.0) enviroment on the Dell XPS 15 (9550)

Optimize external graphics for macs with discrete NVIDIA GPUs.

Sierra DNA SQL queries used for reporting and internal projects

eXtremely Compact Interpreter - An adventure game engine for the Commander X16

📓Notebook of Climente-González et al. (2017), The Functional Impact of Alternative Splicing in Cancer.

Interactive R package to quantify, analyse and visualise alternative splicing

Lightweight and Fast; RNA-seq quantification at the event-level

An unofficial demultiplexing strategy for SPLiT-seq RNA-Seq data

Examples using Clustergrammer2 to explore high-dimensional datasets.

Pipeline for initial analysis of droplet-based single-cell RNA-seq data

Spatial Transcriptomics Dashboard

Validation and manipulation of FASTQ files, scRNA-seq barcode pre-processing and UMI quantification.

Deep learning model for single-cell inference of multi-omic profiles from a single input modality.

Reference mapping for single-cell genomics

Papers with code for single cell related papers

Reconstruction of complex single-cell trajectories using CellRouter

Clustering scRNAseq by genotypes

Conversion between scRNA-seq objects

Harmony framework for connecting scRNA-seq data from discrete time points

Single-cell Hierarchical Poisson Factorization

cTPnet Package

A tool for semi-automatic cell type annotation

BEER: Batch EffEct Remover for single-cell data

Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with millions of cells on laptop.

SHARP: Single-cell RNA-seq Hyper-fast and Accurate processing via ensemble Random Projection

Efficient and precise single-cell reference atlas mapping with Symphony

Demultiplexing pooled scRNA-seq data with or without genotype reference

Spatial alignment of single cell transcriptomic data.

Single cell type annotation guided by cell atlases, with freedom to be queer

scGEAToolbox: Matlab toolbox for single-cell gene expression analyses

A tool for fast and accurate summarizing of variant calling format (VCF) files

A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batches

Imputation method for scRNA-seq based on low-rank approximation