423 Open source projects that are alternatives of or similar to Soapdenovo2

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Solutions to assignments of Coursera Specializations - Deep learning, Machine learning, Algorithms & Data Structures, Image Processing and Python For Everybody

Classify sequencing reads using MinHash.

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fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"

A curated list of phage related software and computational resources for phage scientists, bioinformaticians and enthusiasts.

d3 library to build circular graphs

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The BridgeDb Library source code

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GNparser normalises scientific names and extracts their semantic elements.

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Python library to facilitate genome assembly, annotation, and comparative genomics

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Hifiasm: a haplotype-resolved assembler for accurate Hifi reads

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fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing

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SuperPhy for the semantic web

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dcHiC: Differential compartment analysis for Hi-C datasets

INDRA (Integrated Network and Dynamical Reasoning Assembler) is an automated model assembly system interfacing with NLP systems and databases to collect knowledge, and through a process of assembly, produce causal graphs and dynamical models.

🚦 Run Picard on BAM files and collate 90 metrics into one file.

Single-Cell Analysis in Python. Scales to >1M cells.

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Fast taxonomic classification of metagenomic sequencing reads using a protein reference database

parallel fastq-dump wrapper