809 Open source projects that are alternatives of or similar to Sv Callers

Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs

SigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the number of operative mutational signatures, their activities in each sample, and the probability for each signature to cause a specific mutation type in a cancer sample. The tool makes use of SigProfilerMatrixGen…

Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing

A standard implementation conforming to the Global Alliance for Genomics and Health (GA4GH) Workflow Execution Service (WES) API specification and a web application for managing and executing those WES services.

Genomics using open source tools, running on GCP or AWS

Unix, R and python tools for genomics and data science

DEPRECIATED! Please use nf-core/tools instead

A community-maintained repository of cancer clinical knowledge bases and databases focused on cancer variants.

Pegasus Workflow Management System - Automate, recover, and debug scientific computations.

Cuneiform distributed programming language

Data intensive science for everyone.

An open source platform for managing and analyzing biomedical big data

UGENE is free open-source cross-platform bioinformatics software

Robust, flexible and resource-efficient pipelines using Go and the commandline

A repository for setting up a RNAseq workflow

A collection of scripts and notes related to genomics and bioinformatics

A library to build and execute typed scientific workflows

fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"

Robust and efficient workflows using a simple language agnostic approach

A library for generating an interactive SVG visualization of CWL workflows

PathwayMapper: An interactive and collaborative graphical curation tool for cancer pathways

Workflow Description Language - Specification and Implementations

Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments

Efficient variant-call data storage and retrieval library using the TileDB storage library.

Single-Cell Analysis in Python. Scales to >1M cells.

Fast & accurate alignment of barcoded short-reads

memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping

The SOC Analysts all-in-one CLI tool to automate and speed up workflow.

A wrapper for the EnsEMBL REST API

GLPI plugin that provides an interface with ProcessMaker (http://www.processmaker.com/)

A Swift and Kotlin library for making composable state machines, and UIs driven by those state machines.

Microservice orchestration inspired by AWS Step functions and Apache Airflow

(No maintenance) Detect gene fusion directly from raw fastq files

A lightweight immune repertoire browser

man(1) workflow for Alfred

Automate MaxQuant

Preview Unicode characters and emoji in Alfred

Generic germline variant annotation pipeline

Make your workflow more efficient.

Simple, flexible system to implement workflows

(formerly eelpond) an automated RNA-Seq workflow system

A collection of publications on comparison of high-throughput sequencing technologies.

A full spaCy pipeline and models for scientific/biomedical documents.

基础框架系统，支持.NET和.NET Core平台，语言:C#，DB支持MySql和SqlServer，主要功能有抽象持久化、服务层，将业务基本的增删改查抽离复用；提供代码生成器从DB生成实体、持久化、服务以及MVC控制器，每层依赖接口，并需要在客户端将对应实现层用Autofac程序集依赖注入，用AOP提供日志跟踪、事务、模型验证等。对Autofac、Redis、RabbitMQ封装扩展；DB访问提供自动主从访问，Redis客户端分区。特别适合管理系统。

JAMP - Just Another Metabarcoding Pipeline

A flexible, easy to use, automation framework allowing users to integrate their capabilities and devices to cut through the repetitive, tedious tasks slowing them down. #nsacyber

highly-efficient & lightweight mutation signature matrix aggregation

Quick reference guide on fork and pull request workflow

课题组每周研讨会

A series of DAGs/Workflows to help maintain the operation of Airflow

Simple command line tool to make git more intuitive, along with useful GitHub addons.

Verteego Data Suite

an implementation of NSGA-II in java

Community resources and guidelines for DRUD projects.

Windows Communication Foundation (WCF) and Windows Workflow Foundation (WF) Samples

Fast and distributed workflow runner using ActiveJob and Redis

Self-service data workflow management

🍴 Web applications made easy. Since 2011.

Data and analysis for the Splatter paper