27 Open source projects that are alternatives of or similar to swan_vis

Technology agnostic long read analysis pipeline for transcriptomes

Nanopore sequence read simulator

Minor Variant Calling and Phasing Tools

Predict plasmids from uncorrected long read data

Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data

An accurate and ultra-fast hybrid genome assembler

A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies

A fast tool for hybrid genome assembly of long and short reads

No description or website provided.

PEPPER-Margin-DeepVariant

BELLA: a Computationally-Efficient and Highly-Accurate Long-Read to Long-Read Aligner and Overlapper

LRSDAY: Long-read Sequencing Data Analysis for Yeasts

Suite of tools for use in genome assembly and consensus. Work in progress.

Genome Annotation Without Nightmares

UNDER DEVELOPMENT--- Analysis of long non-coding RNAs from RNA-seq datasets

Mapping-based Genome Size Estimation (MGSE) performs an estimation of a genome size based on a read mapping to an existing genome sequence assembly.

SALSA: A tool to scaffold long read assemblies with Hi-C data

dysgu-SV is a collection of tools for calling structural variants using short or long reads

CCS: Generate Highly Accurate Single-Molecule Consensus Reads (HiFi Reads)

Fast-SG: An alignment-free algorithm for ultrafast scaffolding graph construction from short or long reads.

Reference-based transcript discovery from long RNA read

Close assembly gaps using long-reads at high accuracy.

Long read / genome alignment software

Software for measuring poly(A) tail length and 3′-end modifications using a high-throughput sequencer

Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing

Enjoy your transcriptomic data and analysis responsibly - like sipping a cocktail

Nanopore data analysis in R