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Top 7 oxford-nanopore open source projects

Predict plasmids from uncorrected long read data

✭ 27

python TeX Dockerfile bioinformatics research nanopore genomics pathogen bioinformatics-pipeline pacbio global-health kmer oxford-nanopore plasmid infectious-diseases long-reads uncorrected plasmidfinder

Nanopore data analysis in R

✭ 31

r quality-control minion oxford-nanopore nanopore-sequencing gridion-x5

A Python library to visualize and analyze long-read transcriptomes

✭ 35

Jupyter Notebook python Roff bioinformatics long-read pacbio transcriptome oxford-nanopore pacbio-iso-seq

Nanopore sequence read simulator

✭ 156

python lua simulator genome transcriptome oxford-nanopore nanopore-sequencing

PEPPER-Margin-DeepVariant

✭ 179

python C++c nanopore variants variant-calling oxford-nanopore genome-variation long-reads pacbio-ccs assembly-polishing

LRSDAY: Long-read Sequencing Data Analysis for Yeasts

✭ 26

perl shell Makefile c Visual Basic 6.0 python genomics genome-annotation oxford-nanopore genome-assembly yeast pacbio-data yeastgenome

Technology agnostic long read analysis pipeline for transcriptomes

✭ 96

python r Makefile pacbio transcriptome oxford-nanopore transcript-quantification

1-7 of 7 oxford-nanopore projects