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Top 9 transcriptome open source projects

Software for measuring poly(A) tail length and 3′-end modifications using a high-throughput sequencer

✭ 17

c python shell rna-seq snakemake pipeline transcriptome mrna molecular-biology polya-tail

Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing

✭ 35

C++python bioinformatics rna-seq nanopore genomics clustering transcriptome

Enjoy your transcriptomic data and analysis responsibly - like sipping a cocktail

✭ 66

r gui shiny reproducible-research gene-expression data-visualization bioconductor transcriptome user-friendly data-exploration transcriptomics rna-seq-analysis pathway-analysis rna-seq-data bioconductor-package functional-enrichment-analysis

A Python library to visualize and analyze long-read transcriptomes

✭ 35

Jupyter Notebook python Roff bioinformatics long-read pacbio transcriptome oxford-nanopore pacbio-iso-seq

Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data

✭ 137

r rna-seq sequencing transcriptome transcriptomics single-cell marker-genes seurat cluster-annotation cell-markers

Nanopore sequence read simulator

✭ 156

python lua simulator genome transcriptome oxford-nanopore nanopore-sequencing

Genome Annotation Without Nightmares

✭ 35

perl python shell pipeline genomics genome-annotation transcriptome

Technology agnostic long read analysis pipeline for transcriptomes

✭ 96

python r Makefile pacbio transcriptome oxford-nanopore transcript-quantification

UNDER DEVELOPMENT--- Analysis of long non-coding RNAs from RNA-seq datasets

✭ 24

workflow pipeline rna transcriptome rna-seq-analysis differential-expression lncrna non-coding nf-core long-non-coding

1-9 of 9 transcriptome projects