776 Open source projects that are alternatives of or similar to Swarm

Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.

micca - MICrobial Community Analysis

Versatile open-source tool for microbiome analysis

R scripts to reproduce analyses in our paper comparing clustering methods for high-dimensional cytometry data

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

A cross-platform and ultrafast toolkit for FASTA/Q file manipulation in Golang

Yet Another Chimeric Read Detector

Flexible genotype query among 30,000+ samples whole-genome

EDAM is an ontology of bioinformatics types of data including identifiers, data formats, operations and topics.

Global Biotic Interactions provides access to existing species interaction datasets

🌈Scaffold genome sequence assemblies using linked read sequencing data

The START App: R Shiny Transcriptome Analysis Resource Tool

List of tools and resources related to the 10x Genomics GEMCode/Chromium system

PyTorch implementation of SDAE (Stacked Denoising AutoEncoder)

A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.

compacted de Bruijn graph construction in low memory

Single (i) Cell R package (iCellR) is an interactive R package to work with high-throughput single cell sequencing technologies (i.e scRNA-seq, scVDJ-seq, ST and CITE-seq).

Automatic cluster formation/healing for Elixir applications

Hazelcast IMDG C++ Client

Metadata and website for the Open Bio Ontologies Foundry Ontology Registry

MyGene.info: A BioThings API for gene annotations

Learn how to process, classify, cluster, summarize, understand syntax, semantics and sentiment of text data with the power of Python! This repository contains code and datasets used in my book, "Text Analytics with Python" published by Apress/Springer.

Easy Map Annotation Clustering 📍

A repository for recording the machine learning code

Autocluster and Autoheal for EMQ X Broker

Parser and database to index the terpene profile of different strains of Cannabis from online databases

Robust and efficient workflows using a simple language agnostic approach

A very fast geospatial point clustering library for browsers and Node.

📜 Self-Supervised Learning from Images: Up-to-date reading list.

A curated list of awesome Bioinformatics libraries and software.

Solutions to assignments of Coursera Specializations - Deep learning, Machine learning, Algorithms & Data Structures, Image Processing and Python For Everybody

SquiggleKit: A toolkit for manipulating nanopore signal data

😎 A curated list of software and resources for exploring and visualizing (browsing) expression data 😎

A deep clustering algorithm. Code to reproduce results for the paper N2D: (Not Too) Deep Clustering via Clustering the Local Manifold of an Autoencoded Embedding.

Simple iterator abstract datatype, intended to iterate efficiently on collections while performing some transformations.

GO enrichment with python -- pandas meets networkx

Characterization of Germline variants

Post-analysis of immune repertoire sequencing data

Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins

Bayesian genotyper for structural variants

Code for the paper "Contrastive Clustering" (AAAI 2021)

A Python implementation of COP-KMEANS algorithm

Genome inference from a population reference graph

Biological sequences for the julia language

Machine Learning & Data Mining with JRuby

Bioinformatics Workbook repository

A Multilingual Latent Dirichlet Allocation (LDA) Pipeline with Stop Words Removal, n-gram features, and Inverse Stemming, in Python.

A fast whole-genome aligner based on de Bruijn graphs

A high-level machine learning and deep learning library for the PHP language.

Mnesia autoclustering made easy!

Structural variant toolkit for VCFs

An interactive web tool for quality control of DNA sequencing data

Job scheduler and rate limiter, supports Clustering

Discriminative Neural Clustering for Speaker Diarisation

The docker for lithosphere project

LAMBDA – the Local Aligner for Massive Biological DatA

A tutorial on methods of 16S analysis with QIIME 1

Stringlifier is on Opensource ML Library for detecting random strings in raw text. It can be used in sanitising logs, detecting accidentally exposed credentials and as a pre-processing step in unsupervised ML-based analysis of application text data.

Provides access to complex Bioinformatics software (even BioLinux!) in just one command.

Model and predict short DNA sequence features with neural networks