208 Open source projects that are alternatives of or similar to SynNet-Pipeline

Understand DNA structure and how machine learning can be used to work with DNA sequence data.

📣 Visualise networks of Twitter interactions

BinaryStream - a writer and reader for binary data. Best replacement for pack()/unpack().

[DEPRECATED] Graylog NetFlow plugin

🔬 Assemble large genomes using short reads

Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!

pcapdj - dispatch pcap files

An R package for network centrality

Mapping-based Genome Size Estimation (MGSE) performs an estimation of a genome size based on a read mapping to an existing genome sequence assembly.

VOSviewer Online is a tool for network visualization. It is a web-based version of VOSviewer, a popular tool for constructing and visualizing bibliometric networks.

A fast 23andMe DNA parser and inferrer for Python

GenomeTools genome analysis system.

Das Robert Koch-Institut stellt Systeme zur bundesweiten molekularen Surveillance des SRARS-CoV-2-Virus bereit. Jedes Labor in Deutschland, das SARS-CoV-2 sequenziert, ist laut der Verordnung zur molekulargenetischen Surveillance des Coronavirus SARS-CoV-2 verpflichtet, dem Robert Koch-Institut die Sequenz- und zugehörige Metadaten zu übermittel…

Beautiful graph drawing

Tools for working with GTFS public transit data in ArcGIS

De novo annotation of young retrotransposons

Estimating similarity between vertices is a fundamental issue in network analysis across various domains, such as social networks and biological networks. Methods based on common neighbors and structural contexts have received much attention....

STriP Net: Semantic Similarity of Scientific Papers (S3P) Network

SuperPhy for the semantic web

multigraph: Plot and Manipulate Multigraphs in R

A scalable and accurate probabilistic network configuration analyzer verifying network properties in the face of random failures.

Heavy Peer To Peer: a MPI based benchmark for network diagnostic

ctsTraffic is a highly scalable client/server networking tool giving detailed performance and reliability analytics

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

Markov random fields with covariates

Graph theory analysis of brain MRI data

A genome browser that shows long reads and complex variants better

Source code for the paper "Growing urban bicycle networks", exploring algorithmically the limitations of urban bicycle network growth

A simple yet powerful Java 11 TCP MITM proxy for Dofus 1.29.1

A Wireshark dissector for the FFXIV wire protocol

Genome Interval Arithmetic in R

📚 social networks from novels

Equilibrium Expectation for ERGM parameter estimation for large directed networks

Object-oriented wrapper for EPANET 2.1

Netvisix visualizes the network packet flow between hosts

Official repository - High performance .Net assembly for dissecting and constructing network packets such as ethernet, ip, tcp, udp etc.

Network Analysis of Generalized Musical Spaces

No description or website provided.

CLI tool which looks up hardware vendor names for network devices based on the macvendors.com API

Nanopore sequence read simulator

Supporting data for BAD TRAFFIC Citizen Lab report.

Network Tools

R package implementing edge bundling algorithms

Network recon framework. Build your own, self-hosted and fully-controlled alternatives to Shodan / ZoomEye / Censys and GreyNoise, run your Passive DNS service, collect and analyse network intelligence from your sensors, and much more!

Obsidian tools - a Python package for analysing an Obsidian.md vault

Hierarchical Configuration

Bash script to download/update snapshots of files from NCBI genomes repository (refseq/genbank) with track of changes and without redundancy

Performant, pure-Python subgraph isomorphism and monomorphism search (aka "motif search")

Tools for multimodal and multilevel network analysis

Using Twitter Ego Network Analysis to Detect Sources of Fake News

Download and use genomes the easy way.

💾 📃 "Reads to report" for public health and clinical microbiology

karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome

A public repo for hacky diep stuff - networking protocol, WebAssembly, memory editing, & physics

A simple program written in bash that contains basic Linux network tools, information gathering tools and scanning tools.

ssldump - (de-facto repository gathering patches around the cyberspace)

R implementation to the netinf algorithm. Infers the most likely diffusion network from a set of events

Research on polio / protein folding.

dcHiC: Differential compartment analysis for Hi-C datasets

Open-source datasets for anyone interested in working with network anomaly based machine learning, data science and research