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Top 4 phylogenomics open source projects
libpll
Phylogenetic Likelihood Library
✭ 21
c
M4
Yacc
python
Lex
Makefile
shell
phylogenetics
likelihood
phylogenomics
get phylomarkers
A pipeline to select optimal markers for microbial phylogenomics and species tree estimation using coalescent and concatenation approaches
✭ 34
perl
c
shell
Roff
Makefile
HTML
pipeline
genomics
phylogenetic-trees
phylogenetics
markers
orthologues
microbiology
population-genetics
codon-alignment
maximum-likelihood
phylogenomics
species-trees
recombination
core-genome
species-delimitation
phylogenomics-pipeline
clock-hypothesis
SynNet-Pipeline
Workflow for Building Microsynteny Networks
✭ 32
shell
r
genome
network-analysis
phylogenomics
synteny-network
nullarbor
💾 📃 "Reads to report" for public health and clinical microbiology
✭ 111
perl
Raku
shell
HTML
CSS
PHP
Makefile
public-health
report
variant-calling
bacteria
fastq
phylogenomics
denovo-assembly
genotyping
resistome
virulome
1-4
of
4
phylogenomics projects