441 Open source projects that are alternatives of or similar to tailseeker

A graphical user interface for distributed data processing of high throughput genomics

Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.

A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.

Snakemake based pipeline for RNA-Seq analysis

RNA-seq analysis pipeline for detection gene-fusions

Automated generation of tailored bioinformatics Jupyter Notebooks via a user interface.

An automated RNA-seq pipeline using Nextflow

Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data

Genome Annotation Without Nightmares

UNDER DEVELOPMENT--- Analysis of long non-coding RNAs from RNA-seq datasets

Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing

Exome/Capture/RNASeq Pipeline Implementation using snakemake

RNASeq pipeline

Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders

🐍 Snakefiles for common RNA-seq data analysis workflows.

VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies

FreeCAD - flamingo workbench

A Go package for engineering organisms.

Helper for dealing with secrets in kubernetes.

Old specification for Hack pipes in JavaScript. Please go to the new specification.

Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.

Make it possible to chain regular functions

A pipeline for the computational evaluation of RNA-Seq data

FEELnc : FlExible Extraction of LncRNA

A pipeline to select optimal markers for microbial phylogenomics and species tree estimation using coalescent and concatenation approaches

A library to facilitate machine learning on multi-dimensional images.

TypeScript/JavaScript utilities for those who don't like utilities

Transformers Pipeline with KoELECTRA

CICERO: a versatile method for detecting complex and diverse driver fusions using cancer RNA sequencing data.

🇨🇳 MyDataHarbor是一个致力于解决任意数据源到任意数据源的分布式、高扩展性、高性能、事务级的数据同步中间件。帮助用户可靠、快速、稳定的对海量数据进行准实时增量同步或者定时全量同步，主要定位是为实时交易系统服务，亦可用于大数据的数据同步（ETL领域）。

A lightweight data processing framework for Apache Spark

Reference-based transcript discovery from long RNA read

MTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumina whole genome sequence data of Mycobacterium tuberculosis complex isolates.

Close assembly gaps using long-reads at high accuracy.

Interactive Differential Expression AnaLysis - DE made accessible and reproducible

🚀 Automate versioning, changelog creation, README updates and GitHub releases using GitHub Actions,npm, docker or bash.

Generate beautiful documentation for your data pipelines in markdown format

This module allows a developer to upload SAPUI5/OpenUI5 sources into a SAP NetWeaver ABAP system.

Precision HLA typing from next-generation sequencing data

Google Classroom Data Pipeline

Simple and flexible ML workflow engine

The Blue Brain BioExplorer (BBBE) is a tool for scientists to extract and analyze scientific data from visualization and interactive exploration

基于Spring Cloud的微服务业务框架

An example of how to run a Golang project in Docker in a Buildkite pipeline

Porting DESeq2 and DEXSeq into python via rpy2

No description or website provided.

This code is used to build & run a Docker container for performing predictions against a Spark ML Pipeline.

Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.

Reproducible reanalysis of a combined ChIP-Seq & RNA-Seq data set

A curated collection of publicly available resources on how companies around the world practice DevOps

Catalyst.Classification

SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data

Continuous Integration Platform

Bioinformatics pipeline for SARS-CoV-2 sequencing at CZ Biohub

Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integration Center) to process data. Tibanna supports CWL/WDL (w/ docker), Snakemake (w/ conda) and custom Docker/shell command.

ATAC-seq snakemake pipeline

Use AutoAI to detect fraud

Toolbox for generic NGS analyses - A framework to quickly build pipelines and to perform large-scale NGS analysis

Fun functional programming with pipelinable functions

An online companion to the OSCA manuscript demonstrating Bioconductor resources and workflows for single-cell RNA-seq analysis.