55 Open source projects that are alternatives of or similar to team-rosalind-project

Predicting protein structure through sequence modeling

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A prediction model for differential gene expression (DE) based on genome-wide regulatory interactions

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An R Package for Geneset Enrichment Workflows

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Bioinformatics workflows developed for and used on the St. Jude Cloud project.

Towards fast and accurate SNP genotyping from whole genome sequencing data for bedside diagnostics.

Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling

Contact map analysis for biomolecules; based on MDTraj

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CPM implementation in pure JavaScript

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A curated list of awesome computational cryo-EM methods.

Spatial alignment of single cell transcriptomic data.

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A Curated List of Computational Biology Datasets Suitable for Machine Learning

Collection of scripts for bacterial genomics

Jupyter Dock is a set of Jupyter Notebooks for performing molecular docking protocols interactively, as well as visualizing, converting file formats and analyzing the results.

programs and scripts, mainly python, for analyses related to nucleic or protein sequences

Plant Disease Identification Using Convulutional Neural Network

An easy-to-use way for running Galaxy workflows.

An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced features such as thermodynamic methods, extended Minimal Cut Sets, OptKnock, RobustKnock, OptCouple and more!

A suite of tools to explore protein structures with Protein Blocks 🐍

Syntax highlighting for computational biology

A comprehensive R package to construct interactive and reproducible biological data analysis applications based on the R platform

Hacktoberfest 2021 | World's largest Contributor driven code dataset | Algorithms that run our universe | Your personal library of every algorithm and data structure code that you will ever encounter |

Guide for getting a gig as a tech student.

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A document to help undergraduates keep track of engineering internship opportunities.

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🧬 An R package for visualizing molecular data in 3D

The Microbiome Interpretable Temporal Rule Engine

CellO: Gene expression-based hierarchical cell type classification using the Cell Ontology

A library to build and execute typed scientific workflows

Streamlining SLAM-seq analysis with ultra-high sensitivity

Fitness landscape exploration sandbox for biological sequence design.

A Go package for engineering organisms.

Clustering scRNAseq by genotypes

is an open-source LIMS (laboratory Information Management System) for Next Generation Sequencing sample management, statistics and reports, and bioinformatics analysis service management.

Bystro genetic analysis (annotation, filtering, statistics)

Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.

Pathogen-Host Analysis Tool - A modern Next-Generation Sequencing (NGS) analysis platform