Top bioinformatics-analysis open source projects

iSkyLIMS

is an open-source LIMS (laboratory Information Management System) for Next Generation Sequencing sample management, statistics and reports, and bioinformatics analysis service management.

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javascript python HTML CSS SCSS shell workflow lims ngs bioinformatics-analysis ngs-analysis ngs-data

bystro

Bystro genetic analysis (annotation, filtering, statistics)

✭ 31

perl shell Dockerfile bioinformatics genomics bioinformatics-pipeline bioinformatics-analysis bioinformatics-scripts bioinformatics-databases bioinformatics-algorithms genomics-search

pyrpipe

Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.

✭ 53

python shell bioinformatics rna-seq conda bioinformatics-pipeline bioconda bioinformatics-analysis rna-seq-pipeline ncbi-sra rna-seq-workflows

PHAT

Pathogen-Host Analysis Tool - A modern Next-Generation Sequencing (NGS) analysis platform

team-rosalind-project

This is the main repository for the HackBio'2020 Virtual Internship Experience ❤️

✭ 22

shell Jupyter Notebook python matlab r javascript bioinformatics internship computational-biology bioinformatics-analysis internship-task internship-challenge hackbio team-rosalind

fastenloc

Colocalization analysis of genetic association signals

✭ 25

C++r perl Makefile bioinformatics integrative-analysis bioinformatics-analysis colocalization genetic-association-analysis

GREIN

GREIN : GEO RNA-seq Experiments Interactive Navigator

✭ 40

HTML r rna-seq geo graphical-interface gene-expression bioinformatics-pipeline interactive-analysis shiny-apps rna-seq-analysis rna-seq-data interactive-visualizations bioinformatics-analysis gene-expression-omnibus rna-seq-pipeline geo-data-processing grein

sequencework

programs and scripts, mainly python, for analyses related to nucleic or protein sequences

✭ 22

python Jupyter Notebook lists list bioinformatics genomics dna rna protein-sequences bioinformatics-analysis bioinformatics-scripts

Plant-Disease-Identification-using-CNN

Plant Disease Identification Using Convulutional Neural Network

galaksio

An easy-to-use way for running Galaxy workflows.

✭ 19

javascript HTML python CSS docker science workflow bioinformatics reproducible-research ngs easy-to-use galaxy user-friendly workflows bioinformatics-analysis

PBxplore

A suite of tools to explore protein structures with Protein Blocks 🐍

✭ 21

python structure protein bioinformatics-analysis

BioInstaller

A comprehensive R package to construct interactive and reproducible biological data analysis applications based on the R platform

✭ 52

r Dockerfile Makefile installer bioinformatics-analysis installer-script ngs-analysis

Top 12 bioinformatics-analysis open source projects