1863 Open source projects that are alternatives of or similar to Toil

Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing

contains handy groovy workflow-libs scripts

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A luigi powered analytics / warehouse stack

A DSL for data-driven computational pipelines

An R-focused pipeline toolkit for reproducibility and high-performance computing

An open source platform for managing and analyzing biomedical big data

A library to display an interactive editor for any graph-like data.

BatchFlow helps you conveniently work with random or sequential batches of your data and define data processing and machine learning workflows even for datasets that do not fit into memory.

Configuration with AWS step functions and lambdas which initiates processing from activity state

Workflows for automation of AWS services setup from Github CI/CD

Function-oriented Make-like declarative workflows for R

Scrapy pipeline to store chunked items into Amazon S3 or Google Cloud Storage bucket.

Robust and efficient workflows using a simple language agnostic approach

NLP pipeline software using common workflow language

ATAC-seq peak-calling, QC and differential analysis pipeline

A library to build and execute typed scientific workflows

DEPRECIATED! Please use nf-core/tools instead

Data intensive science for everyone.

VisTrails is an open-source data analysis and visualization tool. It provides a comprehensive provenance infrastructure that maintains detailed history information about the steps followed and data derived in the course of an exploratory task: VisTrails maintains provenance of data products, of the computational processes that derive these products and their executions.

UGENE is free open-source cross-platform bioinformatics software

Terraform Module for CI/CD with AWS Code Pipeline and Code Build for ECS https://cloudposse.com/

A repository for setting up a RNAseq workflow

DNAscan is a fast and efficient bioinformatics pipeline that allows for the analysis of DNA Next Generation sequencing data, requiring very little computational effort and memory usage.

Use this Property Manager CLI to automate Akamai property changes and deployments across many environments.

Robust, flexible and resource-efficient pipelines using Go and the commandline

Pipeline is a package to build multi-staged concurrent workflows with a centralized logging output.

Machine is a workflow/pipeline library for processing data

A Drone plugin for caching current workspace files between builds to reduce your build times

Example workflows for the drake R package

Learn how to build a CI/CD pipeline for SAM-based applications

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

Carthage cache for S3, Minio, Ceph, Google Storage, Artifactory and many others

DISCONTINUED Amazon Product Adverstising Library based on PHP REST and SOAP (only V1) using the Product Advertising API.

Full stack & cross platform app customizable & themeable for any event or conference.

CLI tool to build, test, debug, and deploy Serverless applications using AWS SAM

Asp.Net Core 5 Clean Architecture (Microservices, Modular Monolith, Monolith) samples (+Blazor, Angular 11, React 17, Vue 2.6), Domain-Driven Design, CQRS, Event Sourcing, SOLID, Asp.Net Core Identity Custom Storage, Identity Server 4 Admin UI, Entity Framework Core, Selenium E2E Testing, SignalR Notification, Hangfire Tasks Scheduling, Health Checks, Security Headers, ...

Various popular python libraries, pre-compiled to be compatible with AWS Lambda

Official AWS CodeBuild repository for managed Docker images http://docs.aws.amazon.com/codebuild/latest/userguide/build-env-ref.html

AWS App Mesh is a service mesh that you can use with your microservices to manage service to service communication.

flowable workflow designer base on @antv/g6

React Design Editor has started to developed direct manipulation of editable design tools like Powerpoint, We've developed it with reactjs, ant.design, fabricjs

蓝鲸智云标准运维(SOPS)

asyncio support for botocore library using aiohttp

A library adding some anti-Pythonic syntatic sugar to Python

🔍 A smart launcher. Powered by JavaScript.

An Angular(v5)-based QuickStart single-page app utilizing Amazon Cognito, S3, and DynamoDB (Serverless architecture)

AWS Auditing & Hardening Tool

🚀 Geodesic is a DevOps Linux Distro. We use it as a cloud automation shell. It's the fastest way to get up and running with a rock solid Open Source toolchain. ★ this repo! https://slack.cloudposse.com/

Opinionated full stack web app's boilerplate, ready to be deployed to AWS platform.

Declarative continuous deployment for Kubernetes.

A lightweight stream processing library for Go

A declarative library with an easy-to-use interface for building Flutter applications on AWS.

Control manages the lifecycle of clusters on your infrastructure and allows deployment of applications via HELM. Its deployment and configuration workflows will help you to get up and running with Kubernetes faster.

Orchestra is a Robotic Process Automation system for orchestrating project teams of experts and machines.

macOS development environment setup: Easy-to-understand instructions with automated setup scripts for developer tools like Vim, Sublime Text, Bash, iTerm, Python data analysis, Spark, Hadoop MapReduce, AWS, Heroku, JavaScript web development, Android development, common data stores, and dev-based OS X defaults.

Compare the various managed cloud services offered by the major public cloud providers in the market.

Example 📓 Jupyter notebooks that demonstrate how to build, train, and deploy machine learning models using 🧠 Amazon SageMaker.

Emoji-Log — An Emoji Git commit log messages spec standard. [ 📦👌🐛📖🚀🤖 ‼️]

Serverless reference app and backend API, showcasing authentication and authorization patterns using Amazon Cognito, Amazon API Gateway, AWS Lambda, and AWS IAM.