398 Open source projects that are alternatives of or similar to Vdjtools

Lightweight Iterative Gene set Enrichment in R

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Randomly subsample sequencing reads to a specified coverage

Solutions to assignments of Coursera Specializations - Deep learning, Machine learning, Algorithms & Data Structures, Image Processing and Python For Everybody

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Tools and databases for analyzing HLA and VDJ genes.

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R scripts to reproduce analyses in our paper comparing clustering methods for high-dimensional cytometry data

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Robust and efficient workflows using a simple language agnostic approach

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Yet Another Chimeric Read Detector

Flexible genotype query among 30,000+ samples whole-genome

Analysis pipelines for sequencing data

Conda recipes for the bioconda channel.

VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.

😎 A curated list of software and resources for exploring and visualizing (browsing) expression data 😎

Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).

MyGene.info: A BioThings API for gene annotations

HTS-compatible wrapper for IgBlast V-(D)-J mapping tool

compacted de Bruijn graph construction in low memory

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MetaSRA: normalized sample-specific metadata for the Sequence Read Archive

A fast whole-genome aligner based on de Bruijn graphs

Comprehensive toolkit for generating various numerical features of protein sequences

Genome inference from a population reference graph

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SquiggleKit: A toolkit for manipulating nanopore signal data

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LAMBDA – the Local Aligner for Massive Biological DatA

A lightweight immune repertoire browser

Provides access to complex Bioinformatics software (even BioLinux!) in just one command.

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Structural variant toolkit for VCFs

EDAM is an ontology of bioinformatics types of data including identifiers, data formats, operations and topics.

Protein-Level ASSembler (PLASS): sensitive and precise protein assembler

1D/2D indexing and querying on bgzipped text file with a pair of genomic coordinates