824 Open source projects that are alternatives of or similar to virnet

Improving genome bins through the combination of different binning programs

micca - MICrobial Community Analysis

No description or website provided.

Mapping-Assisted Targeted-Assembly for Metagenomics

A package for designing compact and comprehensive capture probe sets.

Per-base per-nucleotide depth analysis

A library to build and execute typed scientific workflows

Tensorflow Implementation of Densely Connected Bidirectional LSTM with Applications to Sentence Classification

Assembling the cause of phenotypes and genotypes from NGS data

Core functionality for the Autonomio augmented intelligence workbench.

Compare different differential abundance and expression methods

The project uses state of the art deep learning on collected data for automatic analysis of emotions.

Fast alignment and preprocessing of chromatin profiles

Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics

Genomics data visualization in Python by using matplotlib.

Introduction to the Unix Shell for biologists

Sequence Models by Andrew Ng on Coursera. Programming Assignments and Quiz Solutions.

exploratory and interactive microbiome analyses based on heatmaps

Stacked Denoising AutoEncoder based on TensorFlow

R package for microbiome biomarker discovery

My own tools code for NGS data analysis (Next Generation Sequencing)

LSTM RNN for sentiment-based stock prediction

An open-access bioinformatics text

No description or website provided.

Introduction to Applied Mathematics and Informatics in Drug Discovery (AMIDD)

A curated list of awesome bioinformatics software.

Unsupervised domain adaptation method for relation extraction

EpiViz is a scientific information visualization tool for genetic and epigenetic data, used to aid in the exploration and understanding of correlations between various genome features.

Remaining Useful Life (RUL) estimation of Lithium-ion batteries using deep LSTMs

My solutions for Assignments of CS231n: Convolutional Neural Networks for Visual Recognition

SigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the number of operative mutational signatures, their activities in each sample, and the probability for each signature to cause a specific mutation type in a cancer sample. The tool makes use of SigProfilerMatrixGen…

Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.

Pull stock prices from online API and perform predictions using Long Short Term Memory (LSTM) with TensorFlow.js framework

A computational library for learning and evaluating biological knowledge graph embeddings

🚦 Run Picard on BAM files and collate 90 metrics into one file.

Highly customizable, ambiguity-aware dotplots for visual sequence analyses

Persian sentiment analysis ( آناکاوی سهش های فارسی | تحلیل احساسات فارسی )

CCS: Generate Highly Accurate Single-Molecule Consensus Reads (HiFi Reads)

Pytorch implementation of HTR on IAM dataset (word or line level + CTC loss)

Provide R access to the NCI Genomic Data Commons portal.

Fast motif matching in R

Useful bioinformatic scripts

Repository for the experiments described in the paper named "DeepSentiPers: Novel Deep Learning Models Trained Over Proposed Augmented Persian Sentiment Corpus"

GWAS summary statistics files QC tool

PathwayMapper: An interactive and collaborative graphical curation tool for cancer pathways

Rapid determination of appropriate reference genomes.

GraphBin: Refined binning of metagenomic contigs using assembly graphs

Samples for TensorFlow binding for .NET by Lost Tech

React rerelease of MSAViewer

(No maintenance) OpenGene, core libraries for NGS data analysis and bioinformatics in Julia

No description or website provided.

CPU and GPU implementations of some 2D RNN layers

Genotyping of segregating mobile elements insertions

3D printed sculpture of a DNA molecule, showing my own genome

Fast and flexible ORF finder

SIMD-accelerated library for computing global and X-drop affine gap penalty sequence-to-sequence or sequence-to-profile alignments using an adaptive block-based algorithm.

分别使用rnn/cnn/rcnn来实现根据患者描述，进行疾病诊断

Bystro genetic analysis (annotation, filtering, statistics)

netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation

transparently build CWL and Galaxy XML tool definitions for any script that uses argparse