32 Open source projects that are alternatives of or similar to VIRTUS

Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.

VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies

IPython2CWL is a tool for converting IPython Jupyter Notebooks to CWL Command Line Tools by simply providing typing annotation.

A proof of concept of RNAseq pipeline

Create cwl workflows by writing a simple Python script

PISCES is a pipeline for rapid transcript quantitation, genetic fingerprinting, and quality control assessment of RNAseq libraries using Salmon.

CWL tools and workflows for GGR

[Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows

Import and summarize transcript-level estimates for gene-level analysis

Bioinformatics workflows developed for and used on the St. Jude Cloud project.

APIs for discovering genomics tools, their metadata and their containers

A proof of concept RNA-Seq pipeline with Nextflow

Modeling and correcting fragment sequence bias for RNA-seq

Our VM/Docker sharing infrastructure and management component

Exome/Capture/RNASeq Pipeline Implementation using snakemake

Analysing Capture Seq Count Data

[Experimental] Workflow Definition Language (WDL) to CWL

Project Manager for NGS data analysis

viGEN - A bioinformatics pipeline for the exploration of viral RNA in human NGS data

R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/

Software for exploration of gene expression data from single-cell RNA sequencing.

Cross-platform normalization enables machine learning model training on microarray and RNA-seq data simultaneously

Regulatory networks with Direct Information in python

Compare different differential abundance and expression methods

A new open source tool to run CWL workflows on LSF

The CWL v1.0 user guide

REANA: Reusable research data analysis platform

A language server for Common Workflow Language

WDL and CWL compiler for the DNAnexus platform

Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integration Center) to process data. Tibanna supports CWL/WDL (w/ docker), Snakemake (w/ conda) and custom Docker/shell command.

Command line tool to run batch jobs concurrently with ETL framework on AWS or other cloud computing resources

Typescript data model for Common Workflow Language