137 Open source projects that are alternatives of or similar to Workbench

VisualQC : assistive tool to ease the quality control workflow of neuroimaging data.

PyoMyo - Python Opensource Myo armband library

Brian is a free, open source simulator for spiking neural networks.

The open source toolbox for reproducible diffusion MRI-based microstructure estimation

Main TVB codebase

ONI-compatible hardware, firmware, and host APIs for advanced neuroscience experiments.

Train PyTorch Models using the Genetic Algorithm with PyGAD

Fast and scalable spike sorting in python

Flow-based synchronized parallel DAQ from diverse sources and flexible control for neuroscience experiments

EyeLoop is a Python 3-based eye-tracker tailored specifically to dynamic, closed-loop experiments on consumer-grade hardware.

Implementing a RL algorithm based upon a partially observable Markov decision process.

MNE-BIDS is a Python package that allows you to read and write BIDS-compatible datasets with the help of MNE-Python.

The Tensorflow code and a DeepMind Lab wrapper for my article "Meta-Reinforcement Learning" on FloydHub.

A table containing imaging analysis tools for biology, with a focus on calcium imaging.

A publicly-editable collection of open science resources, including tools, datasets, meta-resources, etc.

Systems Neuroscience Computing in Python: user-friendly analysis of large-scale electrophysiology data

A curated list of awesome neuroscience libraries, software and any content related to the domain.

A toolbox for inferring spikes from calcium traces.

Inner ear models for Python

One-Shot Object Appearance Learning using Spiking Neural Networks

dcm2nii DICOM to NIfTI converter: compiled versions available from NITRC

Multi-modal Image Registration And Connectivity anaLysis

Real-time position tracker for behavioral research

Nuerapse simulations for SNNs

Python package for covariance matrices manipulation and Biosignal classification with application in Brain Computer interface

A Python-based simulation framework for bionic vision

All things Miniscope v4

A motor unit based model of skeletal muscle and fatigue

Frequency domain estimation and functional and directed connectivity analysis tools for electrophysiological data

A multi-dimensional embedding algorithm

Core methods and structures for neuroscience research in Julia.

Preparatory Materials, Self-guided Learning, and Project Management for Neuromatch Academy activities

Spiking neural network system

Biologically-realistic recurrent convolutional neural networks

Segmentation of 3D shapes in a common anatomical space

Automated mouse atlas propagation

Example with Cortex V2 API

A Python interface for ABF files

Just Another Tool for Online Studies

A Python library for creating and simulating large-scale brain models

Helping researchers in routine procedures for data collection

EPFL summaries & cheatsheets over 5 years (computer science, communication systems, data science and computational neuroscience).

Resources for data driven neuroscientists.

The MATLAB toolbox for MEG, EEG and iEEG analysis

A lightweight python module to interact with atlases for systems neuroscience

PyTorch Connectomics: segmentation toolbox for EM connectomics

medical image visualization library and development toolkit

Slides, paper notes, class notes, blog posts, and research on ML 📉, statistics 📊, and AI 🤖.

AntroPy: entropy and complexity of (EEG) time-series in Python

A fullstack javascript app for capturing and visualizing OpenBCI EEG data

Automated 3D cell detection and registration of whole-brain images

A Python Toolbox for Statistics and Neurophysiological Signal Processing (EEG, EDA, ECG, EMG...).

A package for data-driven validation of neuron and ion channel models using SciUnit

Temporal Network Tools

Blackrock Microsystems Cerebus Link for Neural Signal Processing

Platform-independent lightweight Python library for designing and conducting timing-critical behavioural and neuroimaging experiments

Core tools required for running Canlab Matlab toolboxes. The heart of this toolbox is object-oriented tools that enable interactive analysis of neuroimaging data and simple scripts using high-level commands tailored to neuroimaging analysis.

Nengo interactive visualizer

For running psychology and neuroscience experiments

A python implementation for a LogGabor filtering and pyramid representation