39 Open source projects that are alternatives of or similar to wub

Nanopore sequence read simulator

Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data

Pipeline for annotating genomes using long read transcriptomics data with pinfish

A small python program to simulate a real-time Nanopore sequencing run based on a previous experiment.

Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling

SARS-CoV-2 workflow for nanopore sequence data

An accurate and ultra-fast hybrid genome assembler

A fast tool for hybrid genome assembly of long and short reads

Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data

SpacePHARER CRISPR Spacer Phage-Host pAiRs findER

PEPPER-Margin-DeepVariant

Gfapy: a flexible and extensible software library for handling sequence graphs in Python

A curated list of awesome nanopore analysis tools.

Detecting methylation using signal-level features from Nanopore sequencing reads

A versatile sequenced read processor for nanopore direct RNA sequencing

A fast multiple sequence alignment program.

TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain

Research release basecalling models and configurations

Mapping-based Genome Size Estimation (MGSE) performs an estimation of a genome size based on a read mapping to an existing genome sequence assembly.

Recentrifuge: robust comparative analysis and contamination removal for metagenomics

Real-time species-typing visualisation for nanopore data.

Predict plasmids from uncorrected long read data

Fast-SG: An alignment-free algorithm for ultrafast scaffolding graph construction from short or long reads.

Classify sequencing reads using MinHash.

InterARTIC - An interactive local web application for viral whole genome sequencing utilising the artic network pipelines..

Reference-based transcript discovery from long RNA read

Long read / genome alignment software

Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing

🔬 De novo assembly of nanopore reads using nextflow

VBZ compression plugin for nanopore signal data

Nanopore demultiplexing, QC and alignment pipeline

A tool to identify, orient, trim and rescue full length cDNA reads

Fast alignment and preprocessing of chromatin profiles

Highly customizable, ambiguity-aware dotplots for visual sequence analyses

No description or website provided.

Sequence alignment tools

Detecting methylation using signal-level features from Nanopore sequencing reads of plants

Nanopore data analysis in R

The first app for Mobile DNA Sequence Alignment and Analysis