1. SplatterSimple simulation of single-cell RNA sequencing data
2. LaceBuilding SuperTranscripts: A linear representation of transcriptome data
4. MINTIEMethod for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.
5. STRetchMethod for detecting STR expansions from short-read sequencing data
6. necklaceCombine reference and assembled transcriptomes for RNA-Seq analysis