All Git Users → seung-lab

11 open source projects by seung-lab

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Multi-core CPU implementation of deep learning for 2D and 3D sliding window convolutional networks (ConvNets).

✭ 92

2. Connected Components 3d

Connected components on multilabel 3D & 2D images. Handles 26, 18, and 6 connected variants.

✭ 90

python cpp cython image-processing algorithm 3d numpy 2d

3. Cloud Volume

Read and write Neuroglancer datasets programmatically.

✭ 63

python serverless cloud numpy big-data s3 matrix mesh tensor

A set of tools for elastic image registration in Julia

✭ 6

jupyter-notebook

Skeletonize densely labeled 3D image segmentations with TEASAR.

✭ 85

python cython C++Dockerfile shell voxel image-segmentation centerline connectomics skeletons biomedical-image-processing skeletonization volumetric-data computer-vision-algorithms teasar medial-axis-transform centerline-extraction

Marching Cubes & Mesh Simplification on multi-label 3D images.

✭ 37

C++python cython meshing marching-cubes-algorithm mesh-generation marching-cubes connectomics biomedical-image-processing mesh-processing volumetric-data mesh-simplification

Weakly Supervised Deep Metric Learning for Template Matching

✭ 29

Compose chunk operators to create a pipeline for local or distributed petabyte-scale computation

✭ 36

python shell Dockerfile image-processing chunk image-segmentation connectome volumetric-data 3d-images convnet-inference composable-operators

Cython bindings for fpzip, a floating point image compression algorithm.

✭ 24

C++c CMake cython python Makefile Dockerfile compression numpy image-analysis floating-point connectomics

Remap, mask, renumber, unique, and in-place transposition of 3D labeled images. Point cloud too.

✭ 29

C++cython python Dockerfile shell numpy looping point-cloud remap biomedical-image-processing array-manipulations unique transpose masking in-place remapping renumbering in-place-transposition

11. python-task-queue

Asynchronous serverless task queue with timed leasing of tasks. Threaded implementations for SQS and local filesystem.

✭ 24

python filesystem sqs asynchronous-tasks sqs-queue task-scheduler task-queue cloud-queues

1-11 of 11 user projects