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Top 6 connectome open source projects

STAGIN: Spatio-Temporal Attention Graph Isomorphism Network

✭ 34

python attention neuroimaging fmri connectome explainability neurips gnn graph-neural-network stagin neurips2021

Compose chunk operators to create a pipeline for local or distributed petabyte-scale computation

✭ 36

python shell Dockerfile image-processing chunk image-segmentation connectome volumetric-data 3d-images convnet-inference composable-operators

navis

Python 3 library for analysis of neuroanatomical data

✭ 68

python visualization blender neuroscience transform segmentation neurons swc volumes skeletons anatomy meshes 3d connectome neuroanatomy nblast neuprint hemibrain

brainGraph

Graph theory analysis of brain MRI data

✭ 136

r statistics neuroscience mri graph-theory neuroimaging complex-networks fmri network-analysis connectomics brain-imaging connectome brain-connectivity tractography

connectir

Fast and memory efficient approach for connectome-wide association studies in R and C++. Uses custom implementation of multivariate distance matrix regression to associate brain and behavior.

✭ 13

r C++Roff connectome

connectomemapper3

Connectome Mapper 3 is a BIDS App that implements full anatomical, diffusion, resting/state functional MRI, and recently EEG processing pipelines, from raw T1 / DWI / BOLD , and preprocessed EEG data to multi-resolution brain parcellation with corresponding connection matrices.

✭ 45

HTML python docker pipelines singularity eeg fmri bids brain connectome parcellation dmri bidsapp bids-apps chuv

1-6 of 6 connectome projects