Top 14 global-health open source projects

The most popular open source electronic health records and medical practice management solution.

Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI

Predict plasmids from uncorrected long read data

Assembling the cause of phenotypes and genotypes from NGS data

Contains functions for pulling publicly-available global COVID-19 case and testing data for analysis and populating a Power BI dashboard.

SaffronTree: Reference free rapid phylogenetic tree construction from raw read data

Offline First Android software client for CommCare, the world's largest platform for designing, managing, and deploying robust mobile applications to frontline workers worldwide

The XForms-derived specification used in the ODK ecosystem. If you are interested in building a tool that is compliant with the forms rendered by ODK tools, this is the place to start. ✨⚒✨

Multilocus sequence typing by blast using the schemes from PubMLST

Improve the quality of a denovo assembly by scaffolding and gap filling

ODK Briefcase is a Java application for fetching and pushing forms and their contents. It helps make billions of data points from ODK portable. Contribute and make the world a better place! ✨💼✨

Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins

Finds SNP sites from a multi-FASTA alignment file

Vue.js based frontend for ODK Central