Top 6 pathways open source projects

PathwayMapper: An interactive and collaborative graphical curation tool for cancer pathways

✭ 47

typescript CSS javascript graphviz bioinformatics systems-biology tcga cancer-genomics pathways network-visualization pathway-analysis cancer-pathways

pathfinder

Pathfinder is a tool for the visual exploration of paths in large graphs.

✭ 25

javascript HTML CSS pathfinder pathways phovea phovea-application

pathpy

pathpy is an OpenSource python package for the modeling and analysis of pathways and temporal networks using higher-order and multi-order graphical models

✭ 124

python data machine-learning data-mining graph analysis model-selection networks temporal-networks graphical-models pathways network-analysis sequential-data multi-order temporal-correlations

newt

A web application to visualize and edit pathway models

✭ 46

javascript HTML XSLT CSS visualization editor bioinformatics biology layout systems-biology pathways network-visualization pathway-analysis newt web-based-visualization sbml sbgn sif pathway-models celldesigner

chise.js

A web application to visualize and edit the pathway models represented by SBGN Process Description Notation

✭ 15

javascript editor bioinformatics biology systems-biology pathways network-visualization pathway-analysis sbgn

geneSCF inactive

GeneSCF moved to a dedicated GitHub page, https://github.com/genescf/GeneSCF

✭ 21

perl gene-annotation gene-ontology pathways kegg pathway-analysis reactome kegg-pathway real-time-analytics enrichment-analysis real-time-processing functional-analysis kegg-gene gene-set-clustering

1-6 of 6 pathways projects