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Top 4 somatic-mutations open source projects

Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer

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python r shell Dockerfile awk bioinformatics genomics variant-calling somatic-mutations snakemake-workflows

Multi-sample somatic variant caller

✭ 45

r Nextflow shell Dockerfile TeX docker bam-files pipeline ngs regression variants somatic-mutations samtools negative-binomial-regression

deTiN

DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated matched control.

✭ 46

Jupyter Notebook python detection tumor cancer-genomics cancer-genome-atlas somatic-mutations tin cancer-variants tumor-in-normal

cardelino

Clone identification from single-cell data

✭ 49

r scrna-seq single-cell somatic-mutations gibbs-sampling clonal-clustering

1-4 of 4 somatic-mutations projects