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Top 6 epigenomics open source projects

Multiome GRN inference.

✭ 21

r transcriptomics single-cell epigenomics

Peax is a tool for interactive visual pattern search and exploration in epigenomic data based on unsupervised representation learning with autoencoders

✭ 63

Jupyter Notebook javascript python SCSS r shell deep-learning data-visualization autoencoder sequential-data epigenomics pattern-search interactive-machine-learning

haystack bio

Haystack: Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline

bap

Bead-based single-cell atac processing

✭ 20

python r genomics epigenetics single-cell epigenomics scatac bead-doublets

ALPS

AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project

✭ 13

r dataviz rstats bioconductor data-analysis chip-seq atac-seq wgbs epigenomics

REPTILE

Predicting regulatory DNA elements based on epigenomic signatures

✭ 25

python r shell bioinformatics dna-methylation bioinformatics-algorithms epigenomics enhancer-prediction

1-6 of 6 epigenomics projects