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All Projects → mathewchamberlain → SignacX

mathewchamberlain / SignacX

Licence: GPL-3.0 License
Signac

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single-cell-rna-seqseuratcellular-phenotypes

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SignacX 2.2.4

Get the most out of your single cell data.
Explore the Website »

View Demo · View Code Base · Request Feature

What is SignacX?

SignacX is software that classifies the cellular phenotype for each individual cell in single cell RNA-sequencing data using neural networks trained with sorted bulk gene expression data from the Human Primary Cell Atlas. To learn more, check out the pre-print, website and code base. You can install SignacX from CRAN by running:

install.packages("SignacX")
library(SignacX)

Contact

Mathew Chamberlain - [email protected]

SignacX version history

SignacX 2.2.4 (2021-07-20)

Enabled SignacX to classify datasets >300,000 cells -- fixed a memory allocation issue. First degree nearest KNN neighbors are now used for Shannon entropy calculation for datasets > 100,000 cells.

SignacX 2.2.3 (2021-07-16)

Fixed a typo in the help section for SignacX::MASC.

SignacX 2.2.2

Addressed issues in the GitHub repository: Labeling of individual cell states corresponding to broad cell types.

SignacX 2.2.1

Addressed issues in the GitHub repository: Integration with Seurat 4.0.0 clustering

SignacX 2.2.0 (2021-02-24)

First CRAN release.

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