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Top 5 seurat open source projects

Signac

✭ 15

r single-cell-rna-seq seurat cellular-phenotypes

ReductionWrappers

R wrappers to connect Python dimensional reduction tools and single cell data objects (Seurat, SingleCellExperiment, etc...)

✭ 31

r wrapper bioinformatics dimensionality-reduction tsne forceatlas2 umap dimension-reduction force-directed-graphs wrappers seurat singlecellexperiment singlecellexperiment-objects paga phate opentsne pacmap dimensional-reduction

Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data

✭ 137

r rna-seq sequencing transcriptome transcriptomics single-cell marker-genes seurat cluster-annotation cell-markers

Interactive-3D-Plotting-in-Seurat-3.0.0

This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data

✭ 80

r plotting rna-seq-analysis umap scrnaseq seurat 3dtsne 3dpca 3dumap scrnaseq-data seurat-objects

Seurat-to-RNA-Velocity

A guide to using a Seurat object in conjunction with RNA Velocity

✭ 92

kallisto seurat bustools anndata rna-velocity kb-python integrating-loom velocyto scvelo kallisto-bustools

1-5 of 5 seurat projects