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All Projects → JiekaiLab → SOT

JiekaiLab / SOT

Licence: other
Single-cell Orientation Tracing

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r
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python
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single-cell-rna-seq

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What is SOT?

Single cell orientation tracing (SOT) is analysis framework for single cell RNA-seq data. SOT searches co-expreesed gene groups that represent abstract biological functions. The gene groups can be used to discover cell types and reconstruct developmental trajectory.

Workflow

workflow

Install package

To install development version from GitHub, use the devtools package

install.packages("devtools")
devtools::install_github("JiekaiLab/SOT")

Vignette

This vignette shows the analysis of reprogramming data described in Resolving Cell Fate Decisions during Somatic Cell Reprogramming by Single-Cell RNA-seq, Molecular Cell. doi: https://doi.org/10.1016/j.molcel.2019.01.042

Contributing

We welcome any bug reports, enhancement requests, and other contributions. To submit a bug report or enhancement request, please put it in issues. For more substantial contributions, please fork this repo, push your changes to your fork, and submit a pull request with a good commit message. For more general discussions or troubleshooting, please email [email protected].

Note that the project description data, including the texts, logos, images, and/or trademarks, for each open source project belongs to its rightful owner. If you wish to add or remove any projects, please contact us at [email protected].