D3EDiscrete Distributional Differential Expression
Stars: ✭ 19 (+18.75%)
Mutual labels: single-cell-rna-seq, human-cell-atlas
rsimsumAnalysis of simulation studies including Monte Carlo error
Stars: ✭ 19 (+18.75%)
Mutual labels: simulations
scCODAA Bayesian model for compositional single-cell data analysis
Stars: ✭ 109 (+581.25%)
Mutual labels: single-cell-rna-seq
scadenDeep Learning based cell composition analysis with Scaden.
Stars: ✭ 61 (+281.25%)
Mutual labels: single-cell-rna-seq
cellrankCellRank for directed single-cell fate mapping
Stars: ✭ 222 (+1287.5%)
Mutual labels: single-cell-rna-seq
pipeCompA R framework for pipeline benchmarking, with application to single-cell RNAseq
Stars: ✭ 38 (+137.5%)
Mutual labels: single-cell-rna-seq
Haskell-abinitiocontains a package in Haskell to calculate the electronic structure properties of molecules using the Hartree-Fock method
Stars: ✭ 14 (-12.5%)
Mutual labels: simulations
squidpySpatial Single Cell Analysis in Python
Stars: ✭ 235 (+1368.75%)
Mutual labels: single-cell-rna-seq
nlexperiment🐟 R package for NetLogo experiments http://bergant.github.io/nlexperiment/
Stars: ✭ 16 (+0%)
Mutual labels: simulations
padePython Agent DEvelopment framework
Stars: ✭ 81 (+406.25%)
Mutual labels: simulations
TaijiAll-in-one analysis pipeline
Stars: ✭ 28 (+75%)
Mutual labels: single-cell-rna-seq
arshamg-scrnaseq-wganWasserstein Generative Adversarial Network for analysing scRNAseq data
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Mutual labels: single-cell-rna-seq
DeclareDesignDeclareDesign: Declare and Diagnose Research Designs
Stars: ✭ 92 (+475%)
Mutual labels: simulations
scAlignA deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batches
Stars: ✭ 32 (+100%)
Mutual labels: human-cell-atlas
dynmethodsA collection of 50+ trajectory inference methods within a common interface 📥📤
Stars: ✭ 94 (+487.5%)
Mutual labels: single-cell-rna-seq
cluster toolkitTools for analyzing galaxy clusters.
Stars: ✭ 16 (+0%)
Mutual labels: simulations
PowerSimulations.jlJulia for optimization simulation and modeling of PowerSystems. Part of the Scalable Integrated Infrastructure Planning Initiative at the National Renewable Energy Lab.
Stars: ✭ 202 (+1162.5%)
Mutual labels: simulations
NebulosaR package to visualize gene expression data based on weighted kernel density estimation
Stars: ✭ 50 (+212.5%)
Mutual labels: single-cell-rna-seq
scTCRseqProcessing of single cell RNAseq data for the recovery of TCRs in python
Stars: ✭ 22 (+37.5%)
Mutual labels: single-cell-rna-seq
scarfToolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with millions of cells on laptop.
Stars: ✭ 54 (+237.5%)
Mutual labels: single-cell-rna-seq