scisorseqrscisorseqr is an R-package for processing of single-cell long read data and analyzing differential isoform expression across any two conditions
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Mutual labels: single-cell-rna-seq
EWCEExpression Weighted Celltype Enrichment. See the package website for up-to-date instructions on usage.
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Mutual labels: single-cell-rna-seq
SPLiT-Seq demultiplexingAn unofficial demultiplexing strategy for SPLiT-seq RNA-Seq data
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Mutual labels: single-cell-rna-seq
scLearnscLearn：Learning for single cell assignment
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Mutual labels: single-cell-rna-seq
SINCERAAn R implementation of the SINCERA pipeline for single cell RNA-seq profiling analysis
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Mutual labels: single-cell-rna-seq
StackedDAEStacked Denoising AutoEncoder based on TensorFlow
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Mutual labels: single-cell-rna-seq
diffxpyDifferential expression analysis for single-cell RNA-seq data.
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Mutual labels: single-cell-rna-seq
scCODAA Bayesian model for compositional single-cell data analysis
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Mutual labels: single-cell-rna-seq
alevin-fry🐟 🔬🦀 alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transcriptomics and feature barcoding.
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Mutual labels: single-cell-rna-seq
CellOCellO: Gene expression-based hierarchical cell type classification using the Cell Ontology
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Mutual labels: single-cell-rna-seq
OrchestratingSingleCellAnalysis-releaseAn online companion to the OSCA manuscript demonstrating Bioconductor resources and workflows for single-cell RNA-seq analysis.
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Mutual labels: single-cell-rna-seq
D3EDiscrete Distributional Differential Expression
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Mutual labels: single-cell-rna-seq
dropEstPipeline for initial analysis of droplet-based single-cell RNA-seq data
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Mutual labels: single-cell-rna-seq
scedarSingle-cell exploratory data analysis for RNA-Seq
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Mutual labels: single-cell-rna-seq
tGPLVMtGPLVM: A Nonparametric, Generative Model for Manifold Learning with scRNA-seq experimental data
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Mutual labels: single-cell-rna-seq
SOTSingle-cell Orientation Tracing
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Mutual labels: single-cell-rna-seq
kmer-homology-paperManuscript for functional prediction of transcriptomic “dark matter” across species
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Mutual labels: single-cell-rna-seq
cellrankCellRank for directed single-cell fate mapping
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Mutual labels: single-cell-rna-seq
SignacXSignac
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Mutual labels: single-cell-rna-seq
monocle3No description or website provided.
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Mutual labels: single-cell-rna-seq
